miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 3' -54.3 NC_003521.1 + 113391 0.67 0.969779
Target:  5'- gCGGACGcCGCGGgcG-GGUGCGcaACUu -3'
miRNA:   3'- aGCUUGU-GCGCCauCuCCACGC--UGAc -5'
14288 3' -54.3 NC_003521.1 + 77083 0.68 0.944586
Target:  5'- gUCGAgcaGCAUGCGGcgcauGGGGUcGCGGCa- -3'
miRNA:   3'- -AGCU---UGUGCGCCau---CUCCA-CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 115914 0.68 0.944586
Target:  5'- gUC-AGCuCGCGGUAGAGGUGaGGCc- -3'
miRNA:   3'- -AGcUUGuGCGCCAUCUCCACgCUGac -5'
14288 3' -54.3 NC_003521.1 + 120893 0.68 0.944586
Target:  5'- cCGuGCAgGUGGUcGGGG-GCGGCUGc -3'
miRNA:   3'- aGCuUGUgCGCCAuCUCCaCGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 198080 0.68 0.952856
Target:  5'- cCGGAUGCGuuGUGGGGG-GCGuCUGa -3'
miRNA:   3'- aGCUUGUGCgcCAUCUCCaCGCuGAC- -5'
14288 3' -54.3 NC_003521.1 + 128036 0.68 0.956661
Target:  5'- cUCGcgccGCACGCGGUAGAaGUGgcCGACg- -3'
miRNA:   3'- -AGCu---UGUGCGCCAUCUcCAC--GCUGac -5'
14288 3' -54.3 NC_003521.1 + 166895 0.68 0.956661
Target:  5'- gCGGGCGCGCGGgguAGGUGa-ACUGc -3'
miRNA:   3'- aGCUUGUGCGCCaucUCCACgcUGAC- -5'
14288 3' -54.3 NC_003521.1 + 58998 0.68 0.960252
Target:  5'- gUCG---GCGUGGUAGAGGUaGCGAa-- -3'
miRNA:   3'- -AGCuugUGCGCCAUCUCCA-CGCUgac -5'
14288 3' -54.3 NC_003521.1 + 43128 0.67 0.966806
Target:  5'- gCGAGCGCuCGGcgcugggcgUGGAGGUGCacgcGCUGg -3'
miRNA:   3'- aGCUUGUGcGCC---------AUCUCCACGc---UGAC- -5'
14288 3' -54.3 NC_003521.1 + 153889 0.69 0.925345
Target:  5'- gUCGuccAGCGCGCGGUAGGGGaacaGCGcCg- -3'
miRNA:   3'- -AGC---UUGUGCGCCAUCUCCa---CGCuGac -5'
14288 3' -54.3 NC_003521.1 + 101402 0.69 0.914358
Target:  5'- aCGGcCACGCaGG-AGAGcccGUGCGGCUGg -3'
miRNA:   3'- aGCUuGUGCG-CCaUCUC---CACGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 81886 0.69 0.914358
Target:  5'- gUCGAcCACGUcaccGGUGGAGGUGgCGAa-- -3'
miRNA:   3'- -AGCUuGUGCG----CCAUCUCCAC-GCUgac -5'
14288 3' -54.3 NC_003521.1 + 112069 0.73 0.750598
Target:  5'- -aGGACGcCGCGGUGGggaucAGGgGCGGCUGg -3'
miRNA:   3'- agCUUGU-GCGCCAUC-----UCCaCGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 235163 0.73 0.760892
Target:  5'- cCGAGCGCGauuggcgucgcgucaUGGUGGAaucccacgcccuguGGUGCGACUGc -3'
miRNA:   3'- aGCUUGUGC---------------GCCAUCU--------------CCACGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 103069 0.73 0.769216
Target:  5'- gCGggUGCGCGGgcGAGGgcUGCuGCUGg -3'
miRNA:   3'- aGCuuGUGCGCCauCUCC--ACGcUGAC- -5'
14288 3' -54.3 NC_003521.1 + 216731 0.73 0.769216
Target:  5'- cCGGAUugGCGG-AGAGGggaugagGCGACg- -3'
miRNA:   3'- aGCUUGugCGCCaUCUCCa------CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 200726 0.72 0.830275
Target:  5'- -aGAACACGCGGUuuucAGGGGUGaCGcGCg- -3'
miRNA:   3'- agCUUGUGCGCCA----UCUCCAC-GC-UGac -5'
14288 3' -54.3 NC_003521.1 + 134557 0.71 0.876034
Target:  5'- aCGGcgAUGCGCagcucguccaGGUAGGGGUGCaGGCUGa -3'
miRNA:   3'- aGCU--UGUGCG----------CCAUCUCCACG-CUGAC- -5'
14288 3' -54.3 NC_003521.1 + 224805 0.71 0.876034
Target:  5'- -gGGACGCGCGuggcGUAGGGcGUcuGCGGCUGg -3'
miRNA:   3'- agCUUGUGCGC----CAUCUC-CA--CGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 88048 0.7 0.882964
Target:  5'- gUUGAGCGCGCGGauGAGGUcgcgguggucgGCGGCg- -3'
miRNA:   3'- -AGCUUGUGCGCCauCUCCA-----------CGCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.