miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 3' -54.3 NC_003521.1 + 168563 0.67 0.977551
Target:  5'- gCGGGC-UGCGGguaAGGUgGCGGCUGa -3'
miRNA:   3'- aGCUUGuGCGCCaucUCCA-CGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 77152 0.67 0.975145
Target:  5'- cUUGGAUuCGUGGUGGuGGUGauGCUGa -3'
miRNA:   3'- -AGCUUGuGCGCCAUCuCCACgcUGAC- -5'
14288 3' -54.3 NC_003521.1 + 114725 0.67 0.975145
Target:  5'- aUCGAccgcuggauccgGCACGCcGUGGGGGUggcGCGGCc- -3'
miRNA:   3'- -AGCU------------UGUGCGcCAUCUCCA---CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 108289 0.67 0.975145
Target:  5'- cCGAGgGCgGUGGUGGcGGUGaCGACg- -3'
miRNA:   3'- aGCUUgUG-CGCCAUCuCCAC-GCUGac -5'
14288 3' -54.3 NC_003521.1 + 150543 0.67 0.975145
Target:  5'- -gGggUcCgGCGGUGGuGGUGCGGgUGg -3'
miRNA:   3'- agCuuGuG-CGCCAUCuCCACGCUgAC- -5'
14288 3' -54.3 NC_003521.1 + 223926 0.67 0.972557
Target:  5'- aUUGGAgGCGCGGccgAGGGGgucgagGCGGCc- -3'
miRNA:   3'- -AGCUUgUGCGCCa--UCUCCa-----CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 168983 0.67 0.969779
Target:  5'- cCGAcGCGCGuCGGUcgcgGGAGGcggGCGACg- -3'
miRNA:   3'- aGCU-UGUGC-GCCA----UCUCCa--CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 167398 0.67 0.969779
Target:  5'- gCGGGCACGCuaGUGGGGGcGCuucGGCUGc -3'
miRNA:   3'- aGCUUGUGCGc-CAUCUCCaCG---CUGAC- -5'
14288 3' -54.3 NC_003521.1 + 113391 0.67 0.969779
Target:  5'- gCGGACGcCGCGGgcG-GGUGCGcaACUu -3'
miRNA:   3'- aGCUUGU-GCGCCauCuCCACGC--UGAc -5'
14288 3' -54.3 NC_003521.1 + 19966 0.67 0.968908
Target:  5'- cCGGGCugGCGGUGaucgugaccuccguGGuGUGCGACa- -3'
miRNA:   3'- aGCUUGugCGCCAU--------------CUcCACGCUGac -5'
14288 3' -54.3 NC_003521.1 + 43128 0.67 0.966806
Target:  5'- gCGAGCGCuCGGcgcugggcgUGGAGGUGCacgcGCUGg -3'
miRNA:   3'- aGCUUGUGcGCC---------AUCUCCACGc---UGAC- -5'
14288 3' -54.3 NC_003521.1 + 186648 0.68 0.960252
Target:  5'- gUCGAcgucGCGCgGCGGUggcGGAGGcgGCGGCc- -3'
miRNA:   3'- -AGCU----UGUG-CGCCA---UCUCCa-CGCUGac -5'
14288 3' -54.3 NC_003521.1 + 58998 0.68 0.960252
Target:  5'- gUCG---GCGUGGUAGAGGUaGCGAa-- -3'
miRNA:   3'- -AGCuugUGCGCCAUCUCCA-CGCUgac -5'
14288 3' -54.3 NC_003521.1 + 117393 0.68 0.959902
Target:  5'- gCGGcACGCGCugugcuggcaccgGGUGGAGG-GCGGCa- -3'
miRNA:   3'- aGCU-UGUGCG-------------CCAUCUCCaCGCUGac -5'
14288 3' -54.3 NC_003521.1 + 172374 0.68 0.956661
Target:  5'- gUCGAugcugaccgGCACGCGGUuGAGGgGCGcCg- -3'
miRNA:   3'- -AGCU---------UGUGCGCCAuCUCCaCGCuGac -5'
14288 3' -54.3 NC_003521.1 + 166895 0.68 0.956661
Target:  5'- gCGGGCGCGCGGgguAGGUGa-ACUGc -3'
miRNA:   3'- aGCUUGUGCGCCaucUCCACgcUGAC- -5'
14288 3' -54.3 NC_003521.1 + 128036 0.68 0.956661
Target:  5'- cUCGcgccGCACGCGGUAGAaGUGgcCGACg- -3'
miRNA:   3'- -AGCu---UGUGCGCCAUCUcCAC--GCUGac -5'
14288 3' -54.3 NC_003521.1 + 198080 0.68 0.952856
Target:  5'- cCGGAUGCGuuGUGGGGG-GCGuCUGa -3'
miRNA:   3'- aGCUUGUGCgcCAUCUCCaCGCuGAC- -5'
14288 3' -54.3 NC_003521.1 + 120893 0.68 0.944586
Target:  5'- cCGuGCAgGUGGUcGGGG-GCGGCUGc -3'
miRNA:   3'- aGCuUGUgCGCCAuCUCCaCGCUGAC- -5'
14288 3' -54.3 NC_003521.1 + 115914 0.68 0.944586
Target:  5'- gUC-AGCuCGCGGUAGAGGUGaGGCc- -3'
miRNA:   3'- -AGcUUGuGCGCCAUCUCCACgCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.