miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14288 5' -60.4 NC_003521.1 + 198893 0.67 0.767945
Target:  5'- uCGCAGcCGCgugagaaagucguuGCCcaGCAGGGCGUaGaGGAUg -3'
miRNA:   3'- -GCGUCaGCG--------------UGG--UGUCCCGCA-C-CCUA- -5'
14288 5' -60.4 NC_003521.1 + 76393 0.67 0.761644
Target:  5'- cCGCGGUgGCGCUgcuagcaccaGCGGcGGUGUGGuGGUg -3'
miRNA:   3'- -GCGUCAgCGUGG----------UGUC-CCGCACC-CUA- -5'
14288 5' -60.4 NC_003521.1 + 54895 0.67 0.752554
Target:  5'- aCGCAGUggcugCGCACCguuuGCAGgaucagcgccGGCGUGGGc- -3'
miRNA:   3'- -GCGUCA-----GCGUGG----UGUC----------CCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 177770 0.67 0.75164
Target:  5'- uCGCGGUCGuCGCCagggccgACGGGGCcuguccgcugGUGGGc- -3'
miRNA:   3'- -GCGUCAGC-GUGG-------UGUCCCG----------CACCCua -5'
14288 5' -60.4 NC_003521.1 + 129205 0.67 0.742445
Target:  5'- gGCGGuucgaccUCGuCGCCGCGGGGCGaGaGGAa -3'
miRNA:   3'- gCGUC-------AGC-GUGGUGUCCCGCaC-CCUa -5'
14288 5' -60.4 NC_003521.1 + 186524 0.68 0.705827
Target:  5'- gCGguGUCGC-CaGCGGGGgcucCGUGGGAg -3'
miRNA:   3'- -GCguCAGCGuGgUGUCCC----GCACCCUa -5'
14288 5' -60.4 NC_003521.1 + 166873 0.68 0.705827
Target:  5'- gCGCAgGUCGUAcaucaaguCCGCGGGcGCGcGGGGUa -3'
miRNA:   3'- -GCGU-CAGCGU--------GGUGUCC-CGCaCCCUA- -5'
14288 5' -60.4 NC_003521.1 + 44059 0.68 0.705827
Target:  5'- cCGCGGUCGCGCCGgcCGGGGCa------ -3'
miRNA:   3'- -GCGUCAGCGUGGU--GUCCCGcacccua -5'
14288 5' -60.4 NC_003521.1 + 55897 0.68 0.677052
Target:  5'- gCGCGGUCGCcgACCcuccgACGGcGGCGgcaacgGGGGUg -3'
miRNA:   3'- -GCGUCAGCG--UGG-----UGUC-CCGCa-----CCCUA- -5'
14288 5' -60.4 NC_003521.1 + 71106 0.69 0.667383
Target:  5'- aCGCAcGUCGCuCUugGGGGaCGUcGGGGg -3'
miRNA:   3'- -GCGU-CAGCGuGGugUCCC-GCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 171649 0.69 0.657689
Target:  5'- -cUAG-CGCGCCGCGgcGGGCGUcGGGAg -3'
miRNA:   3'- gcGUCaGCGUGGUGU--CCCGCA-CCCUa -5'
14288 5' -60.4 NC_003521.1 + 150961 0.69 0.657689
Target:  5'- uGCAGUCGCGCgACGcGGCGcUGGcGGc -3'
miRNA:   3'- gCGUCAGCGUGgUGUcCCGC-ACC-CUa -5'
14288 5' -60.4 NC_003521.1 + 18732 0.69 0.638252
Target:  5'- aCGCuGcCgGCGCUGCAGGGCGggcugUGGGAg -3'
miRNA:   3'- -GCGuCaG-CGUGGUGUCCCGC-----ACCCUa -5'
14288 5' -60.4 NC_003521.1 + 100495 0.69 0.628524
Target:  5'- cCGCcaGGUgGCACCGC-GGGCGUcGGAc -3'
miRNA:   3'- -GCG--UCAgCGUGGUGuCCCGCAcCCUa -5'
14288 5' -60.4 NC_003521.1 + 186789 0.7 0.59938
Target:  5'- cCGCAGUCcacauguuucagGCGCCAC--GGCGUGGGc- -3'
miRNA:   3'- -GCGUCAG------------CGUGGUGucCCGCACCCua -5'
14288 5' -60.4 NC_003521.1 + 7965 0.7 0.589701
Target:  5'- gCGguGUCGCGgccgggaggguCCGCGGcGGCGgGGGAg -3'
miRNA:   3'- -GCguCAGCGU-----------GGUGUC-CCGCaCCCUa -5'
14288 5' -60.4 NC_003521.1 + 109507 0.71 0.550369
Target:  5'- aGUGGUCGCGCCggccgcugcucgaGCAGGGCGUGu--- -3'
miRNA:   3'- gCGUCAGCGUGG-------------UGUCCCGCACccua -5'
14288 5' -60.4 NC_003521.1 + 40400 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 78 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5'
14288 5' -60.4 NC_003521.1 + 240627 0.71 0.532407
Target:  5'- gCGCGuGUCGCuuGCCGC-GGGCGUgcaGGGAg -3'
miRNA:   3'- -GCGU-CAGCG--UGGUGuCCCGCA---CCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.