Results 21 - 40 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14290 | 3' | -59.9 | NC_003521.1 | + | 218400 | 0.66 | 0.861657 |
Target: 5'- gGGCGGuACuCGGccaCGCCGCgcaGCauGGCCa -3' miRNA: 3'- -CUGCC-UG-GCCaa-GCGGCGaa-CG--CCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 184015 | 0.66 | 0.858783 |
Target: 5'- cGGCcGACUcGUUCGCgCGCgacgccgguuggGCGGCCa -3' miRNA: 3'- -CUGcCUGGcCAAGCG-GCGaa----------CGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 127035 | 0.66 | 0.854419 |
Target: 5'- cGCGGugcccgucgcGCUGGccgUCGCCGUcgucgacGCGGCCu -3' miRNA: 3'- cUGCC----------UGGCCa--AGCGGCGaa-----CGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 32867 | 0.66 | 0.854419 |
Target: 5'- aGGCcGAUCGGUUuggcgcccgCGCCGCcggUGCuGCCg -3' miRNA: 3'- -CUGcCUGGCCAA---------GCGGCGa--ACGcCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 233161 | 0.66 | 0.854419 |
Target: 5'- --gGGcACCGcuGUccgCGCCGCcgugGCGGCCg -3' miRNA: 3'- cugCC-UGGC--CAa--GCGGCGaa--CGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 49670 | 0.66 | 0.847753 |
Target: 5'- aGAgGGGCCGGgcgagcgcggcgcugUCGCCGUcaGCcuGCCa -3' miRNA: 3'- -CUgCCUGGCCa--------------AGCGGCGaaCGc-CGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 174478 | 0.66 | 0.847004 |
Target: 5'- cACGcGAgCGGgauccagUUGCUGCcagGCGGCCu -3' miRNA: 3'- cUGC-CUgGCCa------AGCGGCGaa-CGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 163190 | 0.66 | 0.847004 |
Target: 5'- aGCGGACaCGGUggUgGCgGCggcaGCGGCa -3' miRNA: 3'- cUGCCUG-GCCA--AgCGgCGaa--CGCCGg -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 172791 | 0.66 | 0.847004 |
Target: 5'- cGCGGACCa---CGCCGCccGUGGCg -3' miRNA: 3'- cUGCCUGGccaaGCGGCGaaCGCCGg -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 87256 | 0.66 | 0.847004 |
Target: 5'- -gUGGAgCGGcugugCGCCGUgcgcGUGGCCa -3' miRNA: 3'- cuGCCUgGCCaa---GCGGCGaa--CGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 110665 | 0.66 | 0.847004 |
Target: 5'- cACGGcCCGGUcgGCCaGCgcgucgGUGGCCu -3' miRNA: 3'- cUGCCuGGCCAagCGG-CGaa----CGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 58030 | 0.66 | 0.847004 |
Target: 5'- cGACgaGGGCgCGcGcgugUUGCUGCUgGCGGCCa -3' miRNA: 3'- -CUG--CCUG-GC-Ca---AGCGGCGAaCGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 119986 | 0.66 | 0.846253 |
Target: 5'- cGACGaGCCGGgcgacaugCGCCGCUggcUGUaguugaucaggucGGCCu -3' miRNA: 3'- -CUGCcUGGCCaa------GCGGCGA---ACG-------------CCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 65767 | 0.66 | 0.8455 |
Target: 5'- uGACGGGCCGcaucacacCGCCGCcggacaacuuCGGCCg -3' miRNA: 3'- -CUGCCUGGCcaa-----GCGGCGaac-------GCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 174448 | 0.66 | 0.839417 |
Target: 5'- cACGcGCUGGUgUCGCUGCUcGCcgccGGCCa -3' miRNA: 3'- cUGCcUGGCCA-AGCGGCGAaCG----CCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 27243 | 0.66 | 0.839417 |
Target: 5'- gGGCGaGAgcaCGGgcUCGCCGaugaUGCGGCCc -3' miRNA: 3'- -CUGC-CUg--GCCa-AGCGGCga--ACGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 36832 | 0.66 | 0.839417 |
Target: 5'- cACGGGCCGG--CGCUGCU-GU-GCCg -3' miRNA: 3'- cUGCCUGGCCaaGCGGCGAaCGcCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 143917 | 0.66 | 0.838649 |
Target: 5'- aGACGGGCaCGGcgCGCCGCauccccaacUGCucgcaccGGCUg -3' miRNA: 3'- -CUGCCUG-GCCaaGCGGCGa--------ACG-------CCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 140212 | 0.66 | 0.837879 |
Target: 5'- uGGCGG-CCGagUCGCCGUgcagcaugaugGCGGCUc -3' miRNA: 3'- -CUGCCuGGCcaAGCGGCGaa---------CGCCGG- -5' |
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14290 | 3' | -59.9 | NC_003521.1 | + | 195690 | 0.67 | 0.834784 |
Target: 5'- uGCGGgauguccuGCCGGUgcacgaacauacggCGCCGCagguaGCGGCUg -3' miRNA: 3'- cUGCC--------UGGCCAa-------------GCGGCGaa---CGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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