Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14290 | 5' | -58.8 | NC_003521.1 | + | 165863 | 0.76 | 0.315875 |
Target: 5'- aGGAAGCUCCAgcGGUGCAcGugCUCGGg- -3' miRNA: 3'- -UCUUCGAGGU--CCACGU-CugGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 218542 | 0.66 | 0.866193 |
Target: 5'- aGGAgAGCUgCCAGGcgaggcgugGUAGACCCCGa-- -3' miRNA: 3'- -UCU-UCGA-GGUCCa--------CGUCUGGGGCcau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 155806 | 0.66 | 0.842837 |
Target: 5'- uGGggGUcaacUCCaAGGUGCGGGCCUgcgucauCGGUu -3' miRNA: 3'- -UCuuCG----AGG-UCCACGUCUGGG-------GCCAu -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 92090 | 0.67 | 0.835726 |
Target: 5'- gGGggGUgCgCAGG-GCGGuGCCCCGGg- -3' miRNA: 3'- -UCuuCGaG-GUCCaCGUC-UGGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 64335 | 0.67 | 0.827661 |
Target: 5'- -cGAGCagaugagCCAGcUGCAGGCCCUGGg- -3' miRNA: 3'- ucUUCGa------GGUCcACGUCUGGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 141294 | 0.67 | 0.827661 |
Target: 5'- cGAcAGgUgCAGGUGCGGgcggcGCCCCGGa- -3' miRNA: 3'- uCU-UCgAgGUCCACGUC-----UGGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 195598 | 0.67 | 0.811039 |
Target: 5'- --cAGCUCCAGGUGCGcagccGGCCCgccagcUGGUc -3' miRNA: 3'- ucuUCGAGGUCCACGU-----CUGGG------GCCAu -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 1601 | 0.68 | 0.784988 |
Target: 5'- ---uGC-CCacaAGGUcGCAGACCCUGGUAa -3' miRNA: 3'- ucuuCGaGG---UCCA-CGUCUGGGGCCAU- -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 126405 | 0.68 | 0.784988 |
Target: 5'- cGAAGC-CCGGGUggauGUGGGCCuuGGUc -3' miRNA: 3'- uCUUCGaGGUCCA----CGUCUGGggCCAu -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 113419 | 0.68 | 0.784988 |
Target: 5'- -uGAGUUUCuGGUGCAGuacuaccugacGCCCUGGUAc -3' miRNA: 3'- ucUUCGAGGuCCACGUC-----------UGGGGCCAU- -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 141024 | 0.73 | 0.450997 |
Target: 5'- uGGAGGCcguacugcgCCAGGUGUAcACCCCGGg- -3' miRNA: 3'- -UCUUCGa--------GGUCCACGUcUGGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 75776 | 0.72 | 0.524599 |
Target: 5'- aGGccGcCUCCAGGUGCAGACgCCgCGGc- -3' miRNA: 3'- -UCuuC-GAGGUCCACGUCUG-GG-GCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 93650 | 0.7 | 0.665555 |
Target: 5'- uGGggGgUCCGGGUugccaaaauuccccuGUcccGGACCCCGGUc -3' miRNA: 3'- -UCuuCgAGGUCCA---------------CG---UCUGGGGCCAu -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 101810 | 0.69 | 0.68128 |
Target: 5'- cGAAGC-CCAGGgggcggucgcgGUAGGCCUCGGg- -3' miRNA: 3'- uCUUCGaGGUCCa----------CGUCUGGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 223139 | 0.69 | 0.68128 |
Target: 5'- cAGGAGCcaguuggCCGGGUuacGCAGggccaccgugguGCCCCGGUGc -3' miRNA: 3'- -UCUUCGa------GGUCCA---CGUC------------UGGGGCCAU- -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 224524 | 0.69 | 0.69106 |
Target: 5'- aAGAAGCcgCCGGGccgGUAGgcACCCCGGc- -3' miRNA: 3'- -UCUUCGa-GGUCCa--CGUC--UGGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 45976 | 0.65 | 0.879584 |
Target: 5'- cAGAagAGCUCCagccaaaAGGUG-AGGCCCaguaGGUAg -3' miRNA: 3'- -UCU--UCGAGG-------UCCACgUCUGGGg---CCAU- -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 210006 | 0.71 | 0.601329 |
Target: 5'- uGGAGUUCgCGGGUuucgccgGCGGGCCCuCGGUGc -3' miRNA: 3'- uCUUCGAG-GUCCA-------CGUCUGGG-GCCAU- -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 226987 | 0.67 | 0.793811 |
Target: 5'- cGGucGUcacauUCCAGGUGCuuuccgacGGCCCCGGa- -3' miRNA: 3'- -UCuuCG-----AGGUCCACGu-------CUGGGGCCau -5' |
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14290 | 5' | -58.8 | NC_003521.1 | + | 183138 | 0.67 | 0.819429 |
Target: 5'- cGGucGCaUCCccGUGCAGACCCagaCGGUGu -3' miRNA: 3'- -UCuuCG-AGGucCACGUCUGGG---GCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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