miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14291 3' -56.7 NC_003521.1 + 77497 0.65 0.956556
Target:  5'- aCCGCCGCuagugccGCUCgcgccgcugaccguGGACACGc-CGUCg -3'
miRNA:   3'- -GGCGGCGua-----CGAG--------------CCUGUGUacGCAG- -5'
14291 3' -56.7 NC_003521.1 + 122747 0.66 0.953948
Target:  5'- gCCGCCGaugGCUgacacCGGGCACGgggaugGCGg- -3'
miRNA:   3'- -GGCGGCguaCGA-----GCCUGUGUa-----CGCag -5'
14291 3' -56.7 NC_003521.1 + 197715 0.66 0.953948
Target:  5'- cUCGCCGCAgcGCUUGGucagcucguCGCGcGCGUa -3'
miRNA:   3'- -GGCGGCGUa-CGAGCCu--------GUGUaCGCAg -5'
14291 3' -56.7 NC_003521.1 + 207921 0.66 0.953948
Target:  5'- aCGCCGgGgGCggCGGGCACG-GCGg- -3'
miRNA:   3'- gGCGGCgUaCGa-GCCUGUGUaCGCag -5'
14291 3' -56.7 NC_003521.1 + 184850 0.66 0.953948
Target:  5'- gCCGCUGCGacUGC-CGaccccaGGCACAgcaGCGUCc -3'
miRNA:   3'- -GGCGGCGU--ACGaGC------CUGUGUa--CGCAG- -5'
14291 3' -56.7 NC_003521.1 + 129460 0.66 0.950043
Target:  5'- cUCGCC-CGcGCU-GGuuuuCACGUGCGUCa -3'
miRNA:   3'- -GGCGGcGUaCGAgCCu---GUGUACGCAG- -5'
14291 3' -56.7 NC_003521.1 + 108077 0.66 0.950043
Target:  5'- aCGCUacguuuuugaauGCGUGCUcgCGGACACuucCGUCg -3'
miRNA:   3'- gGCGG------------CGUACGA--GCCUGUGuacGCAG- -5'
14291 3' -56.7 NC_003521.1 + 135933 0.66 0.950043
Target:  5'- aCgGCCGCgggauGUGCgacgccUCGGGCGCcUGCGa- -3'
miRNA:   3'- -GgCGGCG-----UACG------AGCCUGUGuACGCag -5'
14291 3' -56.7 NC_003521.1 + 73000 0.66 0.945924
Target:  5'- -gGCCGCuccUGCUCuGGCugACAUGCG-Cg -3'
miRNA:   3'- ggCGGCGu--ACGAGcCUG--UGUACGCaG- -5'
14291 3' -56.7 NC_003521.1 + 125300 0.66 0.945924
Target:  5'- -aGCCGCGUcGUucgCGGACGCggcgGUGgGUCc -3'
miRNA:   3'- ggCGGCGUA-CGa--GCCUGUG----UACgCAG- -5'
14291 3' -56.7 NC_003521.1 + 223269 0.66 0.945924
Target:  5'- -aGCUGCAga-UCGGugACgAUGCGUUc -3'
miRNA:   3'- ggCGGCGUacgAGCCugUG-UACGCAG- -5'
14291 3' -56.7 NC_003521.1 + 192341 0.66 0.945924
Target:  5'- aCCGUCagauGgGUGCUCGGugcucGCACGggcgGCGUUg -3'
miRNA:   3'- -GGCGG----CgUACGAGCC-----UGUGUa---CGCAG- -5'
14291 3' -56.7 NC_003521.1 + 37455 0.66 0.945924
Target:  5'- aCCGCgGCGguuuCUgCGGAgGCGUGUGUg -3'
miRNA:   3'- -GGCGgCGUac--GA-GCCUgUGUACGCAg -5'
14291 3' -56.7 NC_003521.1 + 150684 0.66 0.9455
Target:  5'- gCCGCUGC-UGCUgGGugcugcuGCGCcgGCGg- -3'
miRNA:   3'- -GGCGGCGuACGAgCC-------UGUGuaCGCag -5'
14291 3' -56.7 NC_003521.1 + 136580 0.66 0.9455
Target:  5'- gCCGCUGCAccuggUGCUCGaucacucGGCACucucGUGCGa- -3'
miRNA:   3'- -GGCGGCGU-----ACGAGC-------CUGUG----UACGCag -5'
14291 3' -56.7 NC_003521.1 + 195921 0.66 0.9455
Target:  5'- gCUGCuCGCggGCacUCGGACAUAgccguccUGCGUg -3'
miRNA:   3'- -GGCG-GCGuaCG--AGCCUGUGU-------ACGCAg -5'
14291 3' -56.7 NC_003521.1 + 182421 0.66 0.9455
Target:  5'- aCCGCCGCAUcacGCggccgCGGcagaucccccuguGCACggGgGUCa -3'
miRNA:   3'- -GGCGGCGUA---CGa----GCC-------------UGUGuaCgCAG- -5'
14291 3' -56.7 NC_003521.1 + 126853 0.66 0.941587
Target:  5'- aCCGCCaggaaCA-GCUCGcGGCAgGccUGCGUCa -3'
miRNA:   3'- -GGCGGc----GUaCGAGC-CUGUgU--ACGCAG- -5'
14291 3' -56.7 NC_003521.1 + 13273 0.66 0.941587
Target:  5'- -aGCUGUAUGgUgGGugACG-GCGUCu -3'
miRNA:   3'- ggCGGCGUACgAgCCugUGUaCGCAG- -5'
14291 3' -56.7 NC_003521.1 + 39211 0.66 0.941587
Target:  5'- uCCGCaGCAgcgcggGCUCGGGgACA-GCGg- -3'
miRNA:   3'- -GGCGgCGUa-----CGAGCCUgUGUaCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.