miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14291 5' -57.3 NC_003521.1 + 14751 0.66 0.930567
Target:  5'- -cGGGCcgGCCGCGG-CCGGgGCGCg-- -3'
miRNA:   3'- guCUCG--UGGCGCUaGGUCgUGCGacu -5'
14291 5' -57.3 NC_003521.1 + 25975 0.66 0.930567
Target:  5'- -uGGGCACCuCG-UCgGGCACGgUGAu -3'
miRNA:   3'- guCUCGUGGcGCuAGgUCGUGCgACU- -5'
14291 5' -57.3 NC_003521.1 + 18496 0.66 0.930567
Target:  5'- aGGAGCugcCCGUGugccaCCA-CACGCUGAa -3'
miRNA:   3'- gUCUCGu--GGCGCua---GGUcGUGCGACU- -5'
14291 5' -57.3 NC_003521.1 + 25647 0.66 0.930567
Target:  5'- gCGGAGCAUaccgugugugGCGAacUCCAGCAgGUUGu -3'
miRNA:   3'- -GUCUCGUGg---------CGCU--AGGUCGUgCGACu -5'
14291 5' -57.3 NC_003521.1 + 93486 0.66 0.930567
Target:  5'- -uGAGCuCCGgGGUCgGGCGCGagaUGGc -3'
miRNA:   3'- guCUCGuGGCgCUAGgUCGUGCg--ACU- -5'
14291 5' -57.3 NC_003521.1 + 131969 0.66 0.930567
Target:  5'- aCGGGcuGCACCGCGuGUUCAcGCA-GCUGGa -3'
miRNA:   3'- -GUCU--CGUGGCGC-UAGGU-CGUgCGACU- -5'
14291 5' -57.3 NC_003521.1 + 78918 0.66 0.930567
Target:  5'- aCGGGGaaGCCGCGcUCCAGCAgGUa-- -3'
miRNA:   3'- -GUCUCg-UGGCGCuAGGUCGUgCGacu -5'
14291 5' -57.3 NC_003521.1 + 177740 0.66 0.925463
Target:  5'- -cGGGCAgCGCG--CCGGCGCaGCUGu -3'
miRNA:   3'- guCUCGUgGCGCuaGGUCGUG-CGACu -5'
14291 5' -57.3 NC_003521.1 + 107446 0.66 0.925463
Target:  5'- gCGGAcCGCCGCGcugugCCGGCGgaccgUGCUGAu -3'
miRNA:   3'- -GUCUcGUGGCGCua---GGUCGU-----GCGACU- -5'
14291 5' -57.3 NC_003521.1 + 139378 0.66 0.925463
Target:  5'- aAGAGCGCCGUGcUCUuggccccgcgguGGUcgAUGCUGAu -3'
miRNA:   3'- gUCUCGUGGCGCuAGG------------UCG--UGCGACU- -5'
14291 5' -57.3 NC_003521.1 + 90065 0.66 0.925463
Target:  5'- -cGAGCGCacaCGCGggCgGGCGCGCa-- -3'
miRNA:   3'- guCUCGUG---GCGCuaGgUCGUGCGacu -5'
14291 5' -57.3 NC_003521.1 + 116776 0.66 0.925463
Target:  5'- -uGGGcCGCCGCcg--CGGCACGCUGGc -3'
miRNA:   3'- guCUC-GUGGCGcuagGUCGUGCGACU- -5'
14291 5' -57.3 NC_003521.1 + 59345 0.66 0.922293
Target:  5'- -uGAGCcacgccacgcugcagGCgGCGcgCCAGC-CGCUGGa -3'
miRNA:   3'- guCUCG---------------UGgCGCuaGGUCGuGCGACU- -5'
14291 5' -57.3 NC_003521.1 + 179155 0.66 0.920135
Target:  5'- aAGAGcCGCaCGCuGAauUCCAGCAUGCg-- -3'
miRNA:   3'- gUCUC-GUG-GCG-CU--AGGUCGUGCGacu -5'
14291 5' -57.3 NC_003521.1 + 137639 0.66 0.920135
Target:  5'- ---cGCAUCGCGGUCgAGUACGUg-- -3'
miRNA:   3'- gucuCGUGGCGCUAGgUCGUGCGacu -5'
14291 5' -57.3 NC_003521.1 + 47394 0.66 0.920135
Target:  5'- cCAGGGCGCUGCG--CgAGCGgaGCUGGa -3'
miRNA:   3'- -GUCUCGUGGCGCuaGgUCGUg-CGACU- -5'
14291 5' -57.3 NC_003521.1 + 64436 0.66 0.914583
Target:  5'- aGGAGgACgagacgCGCGAguaccUCC-GCACGCUGAg -3'
miRNA:   3'- gUCUCgUG------GCGCU-----AGGuCGUGCGACU- -5'
14291 5' -57.3 NC_003521.1 + 197340 0.66 0.914583
Target:  5'- --uGGcCGCCGCGG-CCAGCacggccgccGCGCUGGc -3'
miRNA:   3'- gucUC-GUGGCGCUaGGUCG---------UGCGACU- -5'
14291 5' -57.3 NC_003521.1 + 102415 0.66 0.908809
Target:  5'- aAGAGgcugguccaCACgGCGAUCCAGaCGCGCc-- -3'
miRNA:   3'- gUCUC---------GUGgCGCUAGGUC-GUGCGacu -5'
14291 5' -57.3 NC_003521.1 + 110472 0.66 0.908809
Target:  5'- gCAcGGCGCCuGCGG-CC-GCACGUUGAg -3'
miRNA:   3'- -GUcUCGUGG-CGCUaGGuCGUGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.