miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 3' -51.1 NC_003521.1 + 179483 0.66 0.99894
Target:  5'- aCGggUacgCUCCGGcagcgCCgGGGAAC-ACGu -3'
miRNA:   3'- -GCuuAa--GAGGCUa----GGgCCCUUGaUGC- -5'
14293 3' -51.1 NC_003521.1 + 190755 0.66 0.998724
Target:  5'- cCGAAggUCUCaCGGgacucgCUCGGGAGgcCUACGa -3'
miRNA:   3'- -GCUUa-AGAG-GCUa-----GGGCCCUU--GAUGC- -5'
14293 3' -51.1 NC_003521.1 + 92219 0.66 0.998724
Target:  5'- -----gCUCgGGUCCCGGGGucccuCUACc -3'
miRNA:   3'- gcuuaaGAGgCUAGGGCCCUu----GAUGc -5'
14293 3' -51.1 NC_003521.1 + 121709 0.67 0.998177
Target:  5'- cCGAGU--UCCGAccccagucgCCCGGcGAGCUGCc -3'
miRNA:   3'- -GCUUAagAGGCUa--------GGGCC-CUUGAUGc -5'
14293 3' -51.1 NC_003521.1 + 148718 0.67 0.997837
Target:  5'- cCGGGggUUCCGA-CCCGGGGcaccgccCUGCGc -3'
miRNA:   3'- -GCUUaaGAGGCUaGGGCCCUu------GAUGC- -5'
14293 3' -51.1 NC_003521.1 + 201371 0.68 0.995902
Target:  5'- aCGAAccgCUgCCGucCCCGGGAGCcACGg -3'
miRNA:   3'- -GCUUaa-GA-GGCuaGGGCCCUUGaUGC- -5'
14293 3' -51.1 NC_003521.1 + 1143 0.68 0.995902
Target:  5'- aCGAAccgCUgCCGucCCCGGGAGCcACGg -3'
miRNA:   3'- -GCUUaa-GA-GGCuaGGGCCCUUGaUGC- -5'
14293 3' -51.1 NC_003521.1 + 238314 0.68 0.993667
Target:  5'- uCGGAUUCUCCGcGUCCCGGa------- -3'
miRNA:   3'- -GCUUAAGAGGC-UAGGGCCcuugaugc -5'
14293 3' -51.1 NC_003521.1 + 30873 0.68 0.993667
Target:  5'- ---cUUCUCCGAacccuuucCCCGGGu-CUACGg -3'
miRNA:   3'- gcuuAAGAGGCUa-------GGGCCCuuGAUGC- -5'
14293 3' -51.1 NC_003521.1 + 44289 0.69 0.991698
Target:  5'- ---uUUCUCC---CCCGGGAGCUggGCGg -3'
miRNA:   3'- gcuuAAGAGGcuaGGGCCCUUGA--UGC- -5'
14293 3' -51.1 NC_003521.1 + 99168 0.72 0.958078
Target:  5'- uCGAGcucugcUUCUCCGG-CCUGGGGGCUGa- -3'
miRNA:   3'- -GCUU------AAGAGGCUaGGGCCCUUGAUgc -5'
14293 3' -51.1 NC_003521.1 + 105072 0.73 0.910133
Target:  5'- -----cCUUCGGUCCCGGGAACgucCGg -3'
miRNA:   3'- gcuuaaGAGGCUAGGGCCCUUGau-GC- -5'
14293 3' -51.1 NC_003521.1 + 39740 0.74 0.897768
Target:  5'- --cGUUCUCCGuUCCaCGGGGAuCUGCGc -3'
miRNA:   3'- gcuUAAGAGGCuAGG-GCCCUU-GAUGC- -5'
14293 3' -51.1 NC_003521.1 + 239967 0.74 0.897768
Target:  5'- --cGUUCUCCGuUCCaCGGGGAuCUGCGc -3'
miRNA:   3'- gcuUAAGAGGCuAGG-GCCCUU-GAUGC- -5'
14293 3' -51.1 NC_003521.1 + 148053 0.76 0.82312
Target:  5'- uCGGAUUUuaUCUGGggugCCCGGGAugUGCGu -3'
miRNA:   3'- -GCUUAAG--AGGCUa---GGGCCCUugAUGC- -5'
14293 3' -51.1 NC_003521.1 + 3064 1.09 0.015185
Target:  5'- cCGAAUUCUCCGAUCCCGGGAACUACGu -3'
miRNA:   3'- -GCUUAAGAGGCUAGGGCCCUUGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.