miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 55070 0.66 0.890876
Target:  5'- ----cGGCCCCUaGGCgc-UCCGGCg -3'
miRNA:   3'- guguaCCGGGGGcCCGaauAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 67572 0.66 0.890876
Target:  5'- gGCGgcgGGCCCCgCGGGCcagagUC-GCCa -3'
miRNA:   3'- gUGUa--CCGGGG-GCCCGaaua-GGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 149739 0.66 0.890876
Target:  5'- gCGCAgacgGGCCCCUGuuGCgUUGUCCGGaCa -3'
miRNA:   3'- -GUGUa---CCGGGGGCc-CG-AAUAGGUCgG- -5'
14293 5' -58.8 NC_003521.1 + 16959 0.66 0.890876
Target:  5'- aACGUGGUCCCgaGGGa-----CAGCCg -3'
miRNA:   3'- gUGUACCGGGGg-CCCgaauagGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 14435 0.66 0.890876
Target:  5'- gACGUGGUgcacacggCCCUGcGGCggcgUCAGCCg -3'
miRNA:   3'- gUGUACCG--------GGGGC-CCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 174838 0.66 0.890876
Target:  5'- gACuUGGUgUCCGGcGUggccacGUCCAGCCa -3'
miRNA:   3'- gUGuACCGgGGGCC-CGaa----UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 32384 0.66 0.885002
Target:  5'- gCGCGUGGCcagguCCUCGGGCgugcgacacagCAGCCc -3'
miRNA:   3'- -GUGUACCG-----GGGGCCCGaauag------GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 90104 0.66 0.884339
Target:  5'- gACGUGGCCCaCGGcCgagagCCAGUCg -3'
miRNA:   3'- gUGUACCGGGgGCCcGaaua-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 90124 0.66 0.884339
Target:  5'- -----cGCCCCCuaguGGGCggAUCcCAGCCc -3'
miRNA:   3'- guguacCGGGGG----CCCGaaUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 20911 0.66 0.884339
Target:  5'- aGCA-GGUCCCCGGGga---CCGGUCu -3'
miRNA:   3'- gUGUaCCGGGGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 181734 0.66 0.884339
Target:  5'- gCACGcUGGCCaagCGGccGCgcgAUCCGGCCg -3'
miRNA:   3'- -GUGU-ACCGGgg-GCC--CGaa-UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 183516 0.66 0.884339
Target:  5'- cCACG-GGCCCUC--GCUUAUCCAccagucGCCg -3'
miRNA:   3'- -GUGUaCCGGGGGccCGAAUAGGU------CGG- -5'
14293 5' -58.8 NC_003521.1 + 77731 0.66 0.884339
Target:  5'- gGCGcUGGCgCCCGaGGacgggCCGGCCu -3'
miRNA:   3'- gUGU-ACCGgGGGC-CCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 13602 0.66 0.877598
Target:  5'- uCugGUGGgUgCCGGGCUcuUCgUAGCCc -3'
miRNA:   3'- -GugUACCgGgGGCCCGAauAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 119362 0.66 0.877598
Target:  5'- -cCAUGGacaCgCCGGGgaUGUCC-GCCg -3'
miRNA:   3'- guGUACCg--GgGGCCCgaAUAGGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 126778 0.66 0.877598
Target:  5'- gGCA-GGCCCUgGcGCUgcgcgugGUCCAGCUc -3'
miRNA:   3'- gUGUaCCGGGGgCcCGAa------UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 212676 0.66 0.873457
Target:  5'- gGCAUGGUCgCCGccgucgccagggcaaGGCUgguggGUCgGGCCu -3'
miRNA:   3'- gUGUACCGGgGGC---------------CCGAa----UAGgUCGG- -5'
14293 5' -58.8 NC_003521.1 + 127241 0.66 0.870657
Target:  5'- -cCGUuGCCCCCGaGGC----CCAGCCc -3'
miRNA:   3'- guGUAcCGGGGGC-CCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 27425 0.66 0.870657
Target:  5'- gCACGUaGGCCUCCaGGCagc-CCAGgCCg -3'
miRNA:   3'- -GUGUA-CCGGGGGcCCGaauaGGUC-GG- -5'
14293 5' -58.8 NC_003521.1 + 104837 0.66 0.867825
Target:  5'- gACGcGGCCCCCcgacacgcuGGGCgagaucacgacccUGUCCAcGCCc -3'
miRNA:   3'- gUGUaCCGGGGG---------CCCGa------------AUAGGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.