Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 90124 | 0.66 | 0.884339 |
Target: 5'- -----cGCCCCCuaguGGGCggAUCcCAGCCc -3' miRNA: 3'- guguacCGGGGG----CCCGaaUAG-GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 13602 | 0.66 | 0.877598 |
Target: 5'- uCugGUGGgUgCCGGGCUcuUCgUAGCCc -3' miRNA: 3'- -GugUACCgGgGGCCCGAauAG-GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 119362 | 0.66 | 0.877598 |
Target: 5'- -cCAUGGacaCgCCGGGgaUGUCC-GCCg -3' miRNA: 3'- guGUACCg--GgGGCCCgaAUAGGuCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 20911 | 0.66 | 0.884339 |
Target: 5'- aGCA-GGUCCCCGGGga---CCGGUCu -3' miRNA: 3'- gUGUaCCGGGGGCCCgaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 210026 | 0.66 | 0.864242 |
Target: 5'- gGCG-GGCCCUCGGuGCgcuaccgcgcccacAUCCAGCg -3' miRNA: 3'- gUGUaCCGGGGGCC-CGaa------------UAGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 104837 | 0.66 | 0.867825 |
Target: 5'- gACGcGGCCCCCcgacacgcuGGGCgagaucacgacccUGUCCAcGCCc -3' miRNA: 3'- gUGUaCCGGGGG---------CCCGa------------AUAGGU-CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 27425 | 0.66 | 0.870657 |
Target: 5'- gCACGUaGGCCUCCaGGCagc-CCAGgCCg -3' miRNA: 3'- -GUGUA-CCGGGGGcCCGaauaGGUC-GG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 126778 | 0.66 | 0.877598 |
Target: 5'- gGCA-GGCCCUgGcGCUgcgcgugGUCCAGCUc -3' miRNA: 3'- gUGUaCCGGGGgCcCGAa------UAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 32384 | 0.66 | 0.885002 |
Target: 5'- gCGCGUGGCcagguCCUCGGGCgugcgacacagCAGCCc -3' miRNA: 3'- -GUGUACCG-----GGGGCCCGaauag------GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 181734 | 0.66 | 0.884339 |
Target: 5'- gCACGcUGGCCaagCGGccGCgcgAUCCGGCCg -3' miRNA: 3'- -GUGU-ACCGGgg-GCC--CGaa-UAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 183516 | 0.66 | 0.884339 |
Target: 5'- cCACG-GGCCCUC--GCUUAUCCAccagucGCCg -3' miRNA: 3'- -GUGUaCCGGGGGccCGAAUAGGU------CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 203951 | 0.66 | 0.86352 |
Target: 5'- gUACGUGGUCaCCC--GCUUG-CCGGCCc -3' miRNA: 3'- -GUGUACCGG-GGGccCGAAUaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 67572 | 0.66 | 0.890876 |
Target: 5'- gGCGgcgGGCCCCgCGGGCcagagUC-GCCa -3' miRNA: 3'- gUGUa--CCGGGG-GCCCGaaua-GGuCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 212676 | 0.66 | 0.873457 |
Target: 5'- gGCAUGGUCgCCGccgucgccagggcaaGGCUgguggGUCgGGCCu -3' miRNA: 3'- gUGUACCGGgGGC---------------CCGAa----UAGgUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 164602 | 0.66 | 0.86352 |
Target: 5'- gACGUGcGCgCCCaGGGCgug-CCGGCg -3' miRNA: 3'- gUGUAC-CGgGGG-CCCGaauaGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 196952 | 0.66 | 0.86352 |
Target: 5'- aGCGUGGgCgacggCCCGGGag---CCGGCCg -3' miRNA: 3'- gUGUACCgG-----GGGCCCgaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 174838 | 0.66 | 0.890876 |
Target: 5'- gACuUGGUgUCCGGcGUggccacGUCCAGCCa -3' miRNA: 3'- gUGuACCGgGGGCC-CGaa----UAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 127241 | 0.66 | 0.870657 |
Target: 5'- -cCGUuGCCCCCGaGGC----CCAGCCc -3' miRNA: 3'- guGUAcCGGGGGC-CCGaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 90104 | 0.66 | 0.884339 |
Target: 5'- gACGUGGCCCaCGGcCgagagCCAGUCg -3' miRNA: 3'- gUGUACCGGGgGCCcGaaua-GGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 77731 | 0.66 | 0.884339 |
Target: 5'- gGCGcUGGCgCCCGaGGacgggCCGGCCu -3' miRNA: 3'- gUGU-ACCGgGGGC-CCgaauaGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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