miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 193550 0.67 0.840985
Target:  5'- uCGCcgGGaUCCUCGGGCg-GUuuGGCCa -3'
miRNA:   3'- -GUGuaCC-GGGGGCCCGaaUAggUCGG- -5'
14293 5' -58.8 NC_003521.1 + 102883 0.68 0.805161
Target:  5'- gCGCucgGGCuCCUCGGGCagGgaaccgcgacccgCCAGCCa -3'
miRNA:   3'- -GUGua-CCG-GGGGCCCGaaUa------------GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 130161 0.68 0.782649
Target:  5'- aCGCGcUGGCCgaCCGGGCcgUGaCCGuGCCg -3'
miRNA:   3'- -GUGU-ACCGGg-GGCCCGa-AUaGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 48005 0.68 0.782649
Target:  5'- cCGCcgGGCUUCUGcGGCUgcugCCAGCg -3'
miRNA:   3'- -GUGuaCCGGGGGC-CCGAaua-GGUCGg -5'
14293 5' -58.8 NC_003521.1 + 207341 0.68 0.807699
Target:  5'- uCGCGUGGCgCCCgagaucuGGGUc--UCCAGUCa -3'
miRNA:   3'- -GUGUACCGgGGG-------CCCGaauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 198870 0.68 0.764756
Target:  5'- aACAgcuGCCCCCGGauGCacUGUCgCAGCCg -3'
miRNA:   3'- gUGUac-CGGGGGCC--CGa-AUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 127281 0.68 0.764756
Target:  5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3'
miRNA:   3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 186318 0.68 0.77376
Target:  5'- uGCAgauccUGGUCCacgCCGGGCcg--CCGGCCa -3'
miRNA:   3'- gUGU-----ACCGGG---GGCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 128358 0.68 0.77376
Target:  5'- gUAgGUGGCCCcgCCGGGCgcg-CCcaccagGGCCg -3'
miRNA:   3'- -GUgUACCGGG--GGCCCGaauaGG------UCGG- -5'
14293 5' -58.8 NC_003521.1 + 153134 0.68 0.800047
Target:  5'- aCACG-GGCCuCUCGGGCgccUCCAcGCUc -3'
miRNA:   3'- -GUGUaCCGG-GGGCCCGaauAGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 198801 0.68 0.808542
Target:  5'- uGCGUGGUgCCgGcGGCgucUGUCguGCCg -3'
miRNA:   3'- gUGUACCGgGGgC-CCGa--AUAGguCGG- -5'
14293 5' -58.8 NC_003521.1 + 174997 0.68 0.808542
Target:  5'- ---uUGGCCguCUCGGccuGCUUGUCCAGCa -3'
miRNA:   3'- guguACCGG--GGGCC---CGAAUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 139066 0.68 0.791414
Target:  5'- cCGCAgaucacccUGGCCUCgGGGCUggacuacgUGUUCGGCg -3'
miRNA:   3'- -GUGU--------ACCGGGGgCCCGA--------AUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 27350 0.68 0.782649
Target:  5'- cCACcucgGGCUCCUGGaGCaccaggcUCCAGCCg -3'
miRNA:   3'- -GUGua--CCGGGGGCC-CGaau----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 227598 0.68 0.764756
Target:  5'- gGCAUGGCaggCuuGGGCg---CCGGUCg -3'
miRNA:   3'- gUGUACCGg--GggCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 226858 0.68 0.764756
Target:  5'- gGCA-GGCCCaucaGGGC--GUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGgg--CCCGaaUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 178795 0.69 0.718279
Target:  5'- uGCAggacgGGCCCCCGGGCaccucguggUAUCUcGUg -3'
miRNA:   3'- gUGUa----CCGGGGGCCCGa--------AUAGGuCGg -5'
14293 5' -58.8 NC_003521.1 + 180128 0.69 0.727742
Target:  5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3'
miRNA:   3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 136535 0.69 0.737129
Target:  5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3'
miRNA:   3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 43423 0.69 0.746433
Target:  5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3'
miRNA:   3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.