Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 205765 | 0.69 | 0.70875 |
Target: 5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3' miRNA: 3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 175760 | 0.69 | 0.705878 |
Target: 5'- cCAUGUagGGUCCCCGGGCUcguUGUUagaggcauaccccaCAGCCu -3' miRNA: 3'- -GUGUA--CCGGGGGCCCGA---AUAG--------------GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 114424 | 0.69 | 0.746433 |
Target: 5'- cCACAU--CCaCCCGGGCUUcgCCcugacGGCCg -3' miRNA: 3'- -GUGUAccGG-GGGCCCGAAuaGG-----UCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 71293 | 0.69 | 0.746433 |
Target: 5'- gGCAcgGGCCCCUGGGgca--CCAGCa -3' miRNA: 3'- gUGUa-CCGGGGGCCCgaauaGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 180128 | 0.69 | 0.727742 |
Target: 5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3' miRNA: 3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 39236 | 0.69 | 0.718279 |
Target: 5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3' miRNA: 3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 77947 | 0.69 | 0.70875 |
Target: 5'- gACAUGaaGCCCugCUGGGuCUUGgagCCGGCCg -3' miRNA: 3'- gUGUAC--CGGG--GGCCC-GAAUa--GGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 136535 | 0.69 | 0.737129 |
Target: 5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3' miRNA: 3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 43423 | 0.69 | 0.746433 |
Target: 5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3' miRNA: 3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 52853 | 0.69 | 0.718279 |
Target: 5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3' miRNA: 3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 201375 | 0.69 | 0.755644 |
Target: 5'- gACGcGGCCCucggcgCCGGGCUcggCCGGCa -3' miRNA: 3'- gUGUaCCGGG------GGCCCGAauaGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 123291 | 0.7 | 0.702043 |
Target: 5'- aGCGUcaGGUCCgCGGGCgacucggcguccaguUCCAGCCg -3' miRNA: 3'- gUGUA--CCGGGgGCCCGaau------------AGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 235466 | 0.7 | 0.674006 |
Target: 5'- aCGCGcgGGCCCUcucaCGGGCUUaccacuaucgccggaGUCgCGGCCg -3' miRNA: 3'- -GUGUa-CCGGGG----GCCCGAA---------------UAG-GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 33082 | 0.7 | 0.650596 |
Target: 5'- aAgAUGGCCUucugcaCGGGCUccagCCAGCCg -3' miRNA: 3'- gUgUACCGGGg-----GCCCGAaua-GGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 144867 | 0.7 | 0.703002 |
Target: 5'- cCGCG-GGUCCCCgaaccgcauccgugaGGGCUcugAUCCGGCUc -3' miRNA: 3'- -GUGUaCCGGGGG---------------CCCGAa--UAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 37397 | 0.7 | 0.660365 |
Target: 5'- gGCGggGGCgCCCGGGCcUUGUgcgaCGGCCu -3' miRNA: 3'- gUGUa-CCGgGGGCCCG-AAUAg---GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 187612 | 0.7 | 0.69916 |
Target: 5'- gGCAcGGCCUgCCGGGCgag-CCgGGCCg -3' miRNA: 3'- gUGUaCCGGG-GGCCCGaauaGG-UCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 213019 | 0.7 | 0.689519 |
Target: 5'- -cCAUGGCg-CCGGGCgag-CCGGCCg -3' miRNA: 3'- guGUACCGggGGCCCGaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 6060 | 0.7 | 0.697236 |
Target: 5'- ----cGGCCCCgcaGGGCgugaucacgCCAGCCg -3' miRNA: 3'- guguaCCGGGGg--CCCGaaua-----GGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 222233 | 0.7 | 0.687585 |
Target: 5'- aCACGUGGCCCCuUGGGUacacaaaGGCCc -3' miRNA: 3'- -GUGUACCGGGG-GCCCGaauagg-UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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