Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 213019 | 0.7 | 0.689519 |
Target: 5'- -cCAUGGCg-CCGGGCgag-CCGGCCg -3' miRNA: 3'- guGUACCGggGGCCCGaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 123291 | 0.7 | 0.702043 |
Target: 5'- aGCGUcaGGUCCgCGGGCgacucggcguccaguUCCAGCCg -3' miRNA: 3'- gUGUA--CCGGGgGCCCGaau------------AGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 114424 | 0.69 | 0.746433 |
Target: 5'- cCACAU--CCaCCCGGGCUUcgCCcugacGGCCg -3' miRNA: 3'- -GUGUAccGG-GGGCCCGAAuaGG-----UCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 205765 | 0.69 | 0.70875 |
Target: 5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3' miRNA: 3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 175760 | 0.69 | 0.705878 |
Target: 5'- cCAUGUagGGUCCCCGGGCUcguUGUUagaggcauaccccaCAGCCu -3' miRNA: 3'- -GUGUA--CCGGGGGCCCGA---AUAG--------------GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 239464 | 0.69 | 0.718279 |
Target: 5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3' miRNA: 3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 39236 | 0.69 | 0.718279 |
Target: 5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3' miRNA: 3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 43423 | 0.69 | 0.746433 |
Target: 5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3' miRNA: 3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 136535 | 0.69 | 0.737129 |
Target: 5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3' miRNA: 3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 85415 | 0.69 | 0.737129 |
Target: 5'- aGCA-GGCCUCCGGuGC----CCAGCCc -3' miRNA: 3'- gUGUaCCGGGGGCC-CGaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 71293 | 0.69 | 0.746433 |
Target: 5'- gGCAcgGGCCCCUGGGgca--CCAGCa -3' miRNA: 3'- gUGUa-CCGGGGGCCCgaauaGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 4544 | 0.69 | 0.755644 |
Target: 5'- gCGCAgGGUCCCCGGGga-GUCacuaCGGCCg -3' miRNA: 3'- -GUGUaCCGGGGGCCCgaaUAG----GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 178795 | 0.69 | 0.718279 |
Target: 5'- uGCAggacgGGCCCCCGGGCaccucguggUAUCUcGUg -3' miRNA: 3'- gUGUa----CCGGGGGCCCGa--------AUAGGuCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 201375 | 0.69 | 0.755644 |
Target: 5'- gACGcGGCCCucggcgCCGGGCUcggCCGGCa -3' miRNA: 3'- gUGUaCCGGG------GGCCCGAauaGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 77947 | 0.69 | 0.70875 |
Target: 5'- gACAUGaaGCCCugCUGGGuCUUGgagCCGGCCg -3' miRNA: 3'- gUGUAC--CGGG--GGCCC-GAAUa--GGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 52853 | 0.69 | 0.718279 |
Target: 5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3' miRNA: 3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 180128 | 0.69 | 0.727742 |
Target: 5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3' miRNA: 3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 139066 | 0.68 | 0.791414 |
Target: 5'- cCGCAgaucacccUGGCCUCgGGGCUggacuacgUGUUCGGCg -3' miRNA: 3'- -GUGU--------ACCGGGGgCCCGA--------AUAGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 226858 | 0.68 | 0.764756 |
Target: 5'- gGCA-GGCCCaucaGGGC--GUCCAGCg -3' miRNA: 3'- gUGUaCCGGGgg--CCCGaaUAGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 27350 | 0.68 | 0.782649 |
Target: 5'- cCACcucgGGCUCCUGGaGCaccaggcUCCAGCCg -3' miRNA: 3'- -GUGua--CCGGGGGCC-CGaau----AGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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