Results 61 - 80 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 77844 | 0.67 | 0.856192 |
Target: 5'- gCGCAuggggaucuUGGCCagaCGGGCgauggcgCCGGCCu -3' miRNA: 3'- -GUGU---------ACCGGgg-GCCCGaaua---GGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 39701 | 0.67 | 0.848678 |
Target: 5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3' miRNA: 3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 28497 | 0.67 | 0.848678 |
Target: 5'- gGCGUGaCCgUCGGGCUcGUCUAcGCCc -3' miRNA: 3'- gUGUACcGGgGGCCCGAaUAGGU-CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 19738 | 0.67 | 0.840985 |
Target: 5'- aGCGUGGCggugacggCgUCGGGCUUccacUUCAGCCa -3' miRNA: 3'- gUGUACCG--------GgGGCCCGAAu---AGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 213452 | 0.67 | 0.840985 |
Target: 5'- gGCcUGGCCCCCcGGCUggagCCuggugcuccaggAGCCc -3' miRNA: 3'- gUGuACCGGGGGcCCGAaua-GG------------UCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 21150 | 0.67 | 0.825895 |
Target: 5'- cCGCGcgGGCCCCCcgGGGCUguuucgauggucacUCC-GCCg -3' miRNA: 3'- -GUGUa-CCGGGGG--CCCGAau------------AGGuCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 39448 | 0.67 | 0.822643 |
Target: 5'- -cCGUGGCUCCCGGGgacggcagcgguucgUGUCCcgucGCCg -3' miRNA: 3'- guGUACCGGGGGCCCga-------------AUAGGu---CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 119775 | 0.67 | 0.856192 |
Target: 5'- ----cGGCCUCCaGGCUgcgGUCCAccuuccggcGCCa -3' miRNA: 3'- guguaCCGGGGGcCCGAa--UAGGU---------CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 193550 | 0.67 | 0.840985 |
Target: 5'- uCGCcgGGaUCCUCGGGCg-GUuuGGCCa -3' miRNA: 3'- -GUGuaCC-GGGGGCCCGaaUAggUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 203951 | 0.66 | 0.86352 |
Target: 5'- gUACGUGGUCaCCC--GCUUG-CCGGCCc -3' miRNA: 3'- -GUGUACCGG-GGGccCGAAUaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 67572 | 0.66 | 0.890876 |
Target: 5'- gGCGgcgGGCCCCgCGGGCcagagUC-GCCa -3' miRNA: 3'- gUGUa--CCGGGG-GCCCGaaua-GGuCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 55070 | 0.66 | 0.890876 |
Target: 5'- ----cGGCCCCUaGGCgc-UCCGGCg -3' miRNA: 3'- guguaCCGGGGGcCCGaauAGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 32384 | 0.66 | 0.885002 |
Target: 5'- gCGCGUGGCcagguCCUCGGGCgugcgacacagCAGCCc -3' miRNA: 3'- -GUGUACCG-----GGGGCCCGaauag------GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 90124 | 0.66 | 0.884339 |
Target: 5'- -----cGCCCCCuaguGGGCggAUCcCAGCCc -3' miRNA: 3'- guguacCGGGGG----CCCGaaUAG-GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 20911 | 0.66 | 0.884339 |
Target: 5'- aGCA-GGUCCCCGGGga---CCGGUCu -3' miRNA: 3'- gUGUaCCGGGGGCCCgaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 119362 | 0.66 | 0.877598 |
Target: 5'- -cCAUGGacaCgCCGGGgaUGUCC-GCCg -3' miRNA: 3'- guGUACCg--GgGGCCCgaAUAGGuCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 13602 | 0.66 | 0.877598 |
Target: 5'- uCugGUGGgUgCCGGGCUcuUCgUAGCCc -3' miRNA: 3'- -GugUACCgGgGGCCCGAauAG-GUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 126778 | 0.66 | 0.877598 |
Target: 5'- gGCA-GGCCCUgGcGCUgcgcgugGUCCAGCUc -3' miRNA: 3'- gUGUaCCGGGGgCcCGAa------UAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 27425 | 0.66 | 0.870657 |
Target: 5'- gCACGUaGGCCUCCaGGCagc-CCAGgCCg -3' miRNA: 3'- -GUGUA-CCGGGGGcCCGaauaGGUC-GG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 174838 | 0.66 | 0.890876 |
Target: 5'- gACuUGGUgUCCGGcGUggccacGUCCAGCCa -3' miRNA: 3'- gUGuACCGgGGGCC-CGaa----UAGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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