miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 123291 0.7 0.702043
Target:  5'- aGCGUcaGGUCCgCGGGCgacucggcguccaguUCCAGCCg -3'
miRNA:   3'- gUGUA--CCGGGgGCCCGaau------------AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 144867 0.7 0.703002
Target:  5'- cCGCG-GGUCCCCgaaccgcauccgugaGGGCUcugAUCCGGCUc -3'
miRNA:   3'- -GUGUaCCGGGGG---------------CCCGAa--UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 175760 0.69 0.705878
Target:  5'- cCAUGUagGGUCCCCGGGCUcguUGUUagaggcauaccccaCAGCCu -3'
miRNA:   3'- -GUGUA--CCGGGGGCCCGA---AUAG--------------GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 205765 0.69 0.70875
Target:  5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3'
miRNA:   3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 77947 0.69 0.70875
Target:  5'- gACAUGaaGCCCugCUGGGuCUUGgagCCGGCCg -3'
miRNA:   3'- gUGUAC--CGGG--GGCCC-GAAUa--GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 178795 0.69 0.718279
Target:  5'- uGCAggacgGGCCCCCGGGCaccucguggUAUCUcGUg -3'
miRNA:   3'- gUGUa----CCGGGGGCCCGa--------AUAGGuCGg -5'
14293 5' -58.8 NC_003521.1 + 52853 0.69 0.718279
Target:  5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3'
miRNA:   3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 39236 0.69 0.718279
Target:  5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3'
miRNA:   3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 239464 0.69 0.718279
Target:  5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3'
miRNA:   3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 180128 0.69 0.727742
Target:  5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3'
miRNA:   3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 136535 0.69 0.737129
Target:  5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3'
miRNA:   3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 85415 0.69 0.737129
Target:  5'- aGCA-GGCCUCCGGuGC----CCAGCCc -3'
miRNA:   3'- gUGUaCCGGGGGCC-CGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 114424 0.69 0.746433
Target:  5'- cCACAU--CCaCCCGGGCUUcgCCcugacGGCCg -3'
miRNA:   3'- -GUGUAccGG-GGGCCCGAAuaGG-----UCGG- -5'
14293 5' -58.8 NC_003521.1 + 43423 0.69 0.746433
Target:  5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3'
miRNA:   3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5'
14293 5' -58.8 NC_003521.1 + 71293 0.69 0.746433
Target:  5'- gGCAcgGGCCCCUGGGgca--CCAGCa -3'
miRNA:   3'- gUGUa-CCGGGGGCCCgaauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 201375 0.69 0.755644
Target:  5'- gACGcGGCCCucggcgCCGGGCUcggCCGGCa -3'
miRNA:   3'- gUGUaCCGGG------GGCCCGAauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 4544 0.69 0.755644
Target:  5'- gCGCAgGGUCCCCGGGga-GUCacuaCGGCCg -3'
miRNA:   3'- -GUGUaCCGGGGGCCCgaaUAG----GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 198870 0.68 0.764756
Target:  5'- aACAgcuGCCCCCGGauGCacUGUCgCAGCCg -3'
miRNA:   3'- gUGUac-CGGGGGCC--CGa-AUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 227598 0.68 0.764756
Target:  5'- gGCAUGGCaggCuuGGGCg---CCGGUCg -3'
miRNA:   3'- gUGUACCGg--GggCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 226858 0.68 0.764756
Target:  5'- gGCA-GGCCCaucaGGGC--GUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGgg--CCCGaaUAGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.