Results 41 - 60 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 127281 | 0.68 | 0.764756 |
Target: 5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3' miRNA: 3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 186318 | 0.68 | 0.77376 |
Target: 5'- uGCAgauccUGGUCCacgCCGGGCcg--CCGGCCa -3' miRNA: 3'- gUGU-----ACCGGG---GGCCCGaauaGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 128358 | 0.68 | 0.77376 |
Target: 5'- gUAgGUGGCCCcgCCGGGCgcg-CCcaccagGGCCg -3' miRNA: 3'- -GUgUACCGGG--GGCCCGaauaGG------UCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 27350 | 0.68 | 0.782649 |
Target: 5'- cCACcucgGGCUCCUGGaGCaccaggcUCCAGCCg -3' miRNA: 3'- -GUGua--CCGGGGGCC-CGaau----AGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 48005 | 0.68 | 0.782649 |
Target: 5'- cCGCcgGGCUUCUGcGGCUgcugCCAGCg -3' miRNA: 3'- -GUGuaCCGGGGGC-CCGAaua-GGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 130161 | 0.68 | 0.782649 |
Target: 5'- aCGCGcUGGCCgaCCGGGCcgUGaCCGuGCCg -3' miRNA: 3'- -GUGU-ACCGGg-GGCCCGa-AUaGGU-CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 139066 | 0.68 | 0.791414 |
Target: 5'- cCGCAgaucacccUGGCCUCgGGGCUggacuacgUGUUCGGCg -3' miRNA: 3'- -GUGU--------ACCGGGGgCCCGA--------AUAGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 153134 | 0.68 | 0.800047 |
Target: 5'- aCACG-GGCCuCUCGGGCgccUCCAcGCUc -3' miRNA: 3'- -GUGUaCCGG-GGGCCCGaauAGGU-CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 102883 | 0.68 | 0.805161 |
Target: 5'- gCGCucgGGCuCCUCGGGCagGgaaccgcgacccgCCAGCCa -3' miRNA: 3'- -GUGua-CCG-GGGGCCCGaaUa------------GGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 207341 | 0.68 | 0.807699 |
Target: 5'- uCGCGUGGCgCCCgagaucuGGGUc--UCCAGUCa -3' miRNA: 3'- -GUGUACCGgGGG-------CCCGaauAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 198801 | 0.68 | 0.808542 |
Target: 5'- uGCGUGGUgCCgGcGGCgucUGUCguGCCg -3' miRNA: 3'- gUGUACCGgGGgC-CCGa--AUAGguCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 174997 | 0.68 | 0.808542 |
Target: 5'- ---uUGGCCguCUCGGccuGCUUGUCCAGCa -3' miRNA: 3'- guguACCGG--GGGCC---CGAAUAGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 33009 | 0.67 | 0.81689 |
Target: 5'- cCGCA-GGCUCUCGGccaGCUUGaCCAGCg -3' miRNA: 3'- -GUGUaCCGGGGGCC---CGAAUaGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 39448 | 0.67 | 0.822643 |
Target: 5'- -cCGUGGCUCCCGGGgacggcagcgguucgUGUCCcgucGCCg -3' miRNA: 3'- guGUACCGGGGGCCCga-------------AUAGGu---CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 239675 | 0.67 | 0.822643 |
Target: 5'- -cCGUGGCUCCCGGGgacggcagcgguucgUGUCCcgucGCCg -3' miRNA: 3'- guGUACCGGGGGCCCga-------------AUAGGu---CGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 21150 | 0.67 | 0.825895 |
Target: 5'- cCGCGcgGGCCCCCcgGGGCUguuucgauggucacUCC-GCCg -3' miRNA: 3'- -GUGUa-CCGGGGG--CCCGAau------------AGGuCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 67938 | 0.67 | 0.833119 |
Target: 5'- gACAUGG-CCCUGGGCUcuUGgcucUUCGGCa -3' miRNA: 3'- gUGUACCgGGGGCCCGA--AU----AGGUCGg -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 213452 | 0.67 | 0.840985 |
Target: 5'- gGCcUGGCCCCCcGGCUggagCCuggugcuccaggAGCCc -3' miRNA: 3'- gUGuACCGGGGGcCCGAaua-GG------------UCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 197386 | 0.67 | 0.840985 |
Target: 5'- gGCucUGGCUcgccgCCCGGGaCUgggUGUCUGGCCa -3' miRNA: 3'- gUGu-ACCGG-----GGGCCC-GA---AUAGGUCGG- -5' |
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14293 | 5' | -58.8 | NC_003521.1 | + | 193550 | 0.67 | 0.840985 |
Target: 5'- uCGCcgGGaUCCUCGGGCg-GUuuGGCCa -3' miRNA: 3'- -GUGuaCC-GGGGGCCCGaaUAggUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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