miRNA display CGI


Results 61 - 80 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 19738 0.67 0.840985
Target:  5'- aGCGUGGCggugacggCgUCGGGCUUccacUUCAGCCa -3'
miRNA:   3'- gUGUACCG--------GgGGCCCGAAu---AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 239928 0.67 0.848678
Target:  5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3'
miRNA:   3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 233414 0.67 0.848678
Target:  5'- gGCuccUGGCCCCgGuGGCUccgaCGGCCu -3'
miRNA:   3'- gUGu--ACCGGGGgC-CCGAauagGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 138891 0.67 0.848678
Target:  5'- cCACGUGGaCCCCaccGGCgagUAcgCCGGCUc -3'
miRNA:   3'- -GUGUACC-GGGGgc-CCGa--AUa-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 120271 0.67 0.848678
Target:  5'- -cCcgGGCgcucCCCCGGGaccg-CCGGCCg -3'
miRNA:   3'- guGuaCCG----GGGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 28497 0.67 0.848678
Target:  5'- gGCGUGaCCgUCGGGCUcGUCUAcGCCc -3'
miRNA:   3'- gUGUACcGGgGGCCCGAaUAGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 39701 0.67 0.848678
Target:  5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3'
miRNA:   3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 119775 0.67 0.856192
Target:  5'- ----cGGCCUCCaGGCUgcgGUCCAccuuccggcGCCa -3'
miRNA:   3'- guguaCCGGGGGcCCGAa--UAGGU---------CGG- -5'
14293 5' -58.8 NC_003521.1 + 77844 0.67 0.856192
Target:  5'- gCGCAuggggaucuUGGCCagaCGGGCgauggcgCCGGCCu -3'
miRNA:   3'- -GUGU---------ACCGGgg-GCCCGaaua---GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 203951 0.66 0.86352
Target:  5'- gUACGUGGUCaCCC--GCUUG-CCGGCCc -3'
miRNA:   3'- -GUGUACCGG-GGGccCGAAUaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 196952 0.66 0.86352
Target:  5'- aGCGUGGgCgacggCCCGGGag---CCGGCCg -3'
miRNA:   3'- gUGUACCgG-----GGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 164602 0.66 0.86352
Target:  5'- gACGUGcGCgCCCaGGGCgug-CCGGCg -3'
miRNA:   3'- gUGUAC-CGgGGG-CCCGaauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 210026 0.66 0.864242
Target:  5'- gGCG-GGCCCUCGGuGCgcuaccgcgcccacAUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGGGCC-CGaa------------UAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 104837 0.66 0.867825
Target:  5'- gACGcGGCCCCCcgacacgcuGGGCgagaucacgacccUGUCCAcGCCc -3'
miRNA:   3'- gUGUaCCGGGGG---------CCCGa------------AUAGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 27425 0.66 0.870657
Target:  5'- gCACGUaGGCCUCCaGGCagc-CCAGgCCg -3'
miRNA:   3'- -GUGUA-CCGGGGGcCCGaauaGGUC-GG- -5'
14293 5' -58.8 NC_003521.1 + 127241 0.66 0.870657
Target:  5'- -cCGUuGCCCCCGaGGC----CCAGCCc -3'
miRNA:   3'- guGUAcCGGGGGC-CCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 212676 0.66 0.873457
Target:  5'- gGCAUGGUCgCCGccgucgccagggcaaGGCUgguggGUCgGGCCu -3'
miRNA:   3'- gUGUACCGGgGGC---------------CCGAa----UAGgUCGG- -5'
14293 5' -58.8 NC_003521.1 + 126778 0.66 0.877598
Target:  5'- gGCA-GGCCCUgGcGCUgcgcgugGUCCAGCUc -3'
miRNA:   3'- gUGUaCCGGGGgCcCGAa------UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 13602 0.66 0.877598
Target:  5'- uCugGUGGgUgCCGGGCUcuUCgUAGCCc -3'
miRNA:   3'- -GugUACCgGgGGCCCGAauAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 119362 0.66 0.877598
Target:  5'- -cCAUGGacaCgCCGGGgaUGUCC-GCCg -3'
miRNA:   3'- guGUACCg--GgGGCCCgaAUAGGuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.