miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 3098 0.99 0.011956
Target:  5'- uCACAUGGCCCCCGGGUUcAUCCAGCCc -3'
miRNA:   3'- -GUGUACCGGGGGCCCGAaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 4544 0.69 0.755644
Target:  5'- gCGCAgGGUCCCCGGGga-GUCacuaCGGCCg -3'
miRNA:   3'- -GUGUaCCGGGGGCCCgaaUAG----GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 6060 0.7 0.697236
Target:  5'- ----cGGCCCCgcaGGGCgugaucacgCCAGCCg -3'
miRNA:   3'- guguaCCGGGGg--CCCGaaua-----GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 13602 0.66 0.877598
Target:  5'- uCugGUGGgUgCCGGGCUcuUCgUAGCCc -3'
miRNA:   3'- -GugUACCgGgGGCCCGAauAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 14435 0.66 0.890876
Target:  5'- gACGUGGUgcacacggCCCUGcGGCggcgUCAGCCg -3'
miRNA:   3'- gUGUACCG--------GGGGC-CCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 16959 0.66 0.890876
Target:  5'- aACGUGGUCCCgaGGGa-----CAGCCg -3'
miRNA:   3'- gUGUACCGGGGg-CCCgaauagGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 19738 0.67 0.840985
Target:  5'- aGCGUGGCggugacggCgUCGGGCUUccacUUCAGCCa -3'
miRNA:   3'- gUGUACCG--------GgGGCCCGAAu---AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 20911 0.66 0.884339
Target:  5'- aGCA-GGUCCCCGGGga---CCGGUCu -3'
miRNA:   3'- gUGUaCCGGGGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 21150 0.67 0.825895
Target:  5'- cCGCGcgGGCCCCCcgGGGCUguuucgauggucacUCC-GCCg -3'
miRNA:   3'- -GUGUa-CCGGGGG--CCCGAau------------AGGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 27350 0.68 0.782649
Target:  5'- cCACcucgGGCUCCUGGaGCaccaggcUCCAGCCg -3'
miRNA:   3'- -GUGua--CCGGGGGCC-CGaau----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 27425 0.66 0.870657
Target:  5'- gCACGUaGGCCUCCaGGCagc-CCAGgCCg -3'
miRNA:   3'- -GUGUA-CCGGGGGcCCGaauaGGUC-GG- -5'
14293 5' -58.8 NC_003521.1 + 28497 0.67 0.848678
Target:  5'- gGCGUGaCCgUCGGGCUcGUCUAcGCCc -3'
miRNA:   3'- gUGUACcGGgGGCCCGAaUAGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 32384 0.66 0.885002
Target:  5'- gCGCGUGGCcagguCCUCGGGCgugcgacacagCAGCCc -3'
miRNA:   3'- -GUGUACCG-----GGGGCCCGaauag------GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 33009 0.67 0.81689
Target:  5'- cCGCA-GGCUCUCGGccaGCUUGaCCAGCg -3'
miRNA:   3'- -GUGUaCCGGGGGCC---CGAAUaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 33082 0.7 0.650596
Target:  5'- aAgAUGGCCUucugcaCGGGCUccagCCAGCCg -3'
miRNA:   3'- gUgUACCGGGg-----GCCCGAaua-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 37397 0.7 0.660365
Target:  5'- gGCGggGGCgCCCGGGCcUUGUgcgaCGGCCu -3'
miRNA:   3'- gUGUa-CCGgGGGCCCG-AAUAg---GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 39236 0.69 0.718279
Target:  5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3'
miRNA:   3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 39448 0.67 0.822643
Target:  5'- -cCGUGGCUCCCGGGgacggcagcgguucgUGUCCcgucGCCg -3'
miRNA:   3'- guGUACCGGGGGCCCga-------------AUAGGu---CGG- -5'
14293 5' -58.8 NC_003521.1 + 39701 0.67 0.848678
Target:  5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3'
miRNA:   3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 43423 0.69 0.746433
Target:  5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3'
miRNA:   3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.