miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 48005 0.68 0.782649
Target:  5'- cCGCcgGGCUUCUGcGGCUgcugCCAGCg -3'
miRNA:   3'- -GUGuaCCGGGGGC-CCGAaua-GGUCGg -5'
14293 5' -58.8 NC_003521.1 + 52853 0.69 0.718279
Target:  5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3'
miRNA:   3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 55070 0.66 0.890876
Target:  5'- ----cGGCCCCUaGGCgc-UCCGGCg -3'
miRNA:   3'- guguaCCGGGGGcCCGaauAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 58745 0.72 0.572537
Target:  5'- uGCAgcaGCCaCUgCGGGCUgagGUCCAGCCa -3'
miRNA:   3'- gUGUac-CGG-GG-GCCCGAa--UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 67572 0.66 0.890876
Target:  5'- gGCGgcgGGCCCCgCGGGCcagagUC-GCCa -3'
miRNA:   3'- gUGUa--CCGGGG-GCCCGaaua-GGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 67938 0.67 0.833119
Target:  5'- gACAUGG-CCCUGGGCUcuUGgcucUUCGGCa -3'
miRNA:   3'- gUGUACCgGGGGCCCGA--AU----AGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 71293 0.69 0.746433
Target:  5'- gGCAcgGGCCCCUGGGgca--CCAGCa -3'
miRNA:   3'- gUGUa-CCGGGGGCCCgaauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 77731 0.66 0.884339
Target:  5'- gGCGcUGGCgCCCGaGGacgggCCGGCCu -3'
miRNA:   3'- gUGU-ACCGgGGGC-CCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 77844 0.67 0.856192
Target:  5'- gCGCAuggggaucuUGGCCagaCGGGCgauggcgCCGGCCu -3'
miRNA:   3'- -GUGU---------ACCGGgg-GCCCGaaua---GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 77947 0.69 0.70875
Target:  5'- gACAUGaaGCCCugCUGGGuCUUGgagCCGGCCg -3'
miRNA:   3'- gUGUAC--CGGG--GGCCC-GAAUa--GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 82696 0.7 0.679835
Target:  5'- cCACAUGGUCgaUgCGGGCcaaGUCCAGCa -3'
miRNA:   3'- -GUGUACCGG--GgGCCCGaa-UAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 85415 0.69 0.737129
Target:  5'- aGCA-GGCCUCCGGuGC----CCAGCCc -3'
miRNA:   3'- gUGUaCCGGGGGCC-CGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 90104 0.66 0.884339
Target:  5'- gACGUGGCCCaCGGcCgagagCCAGUCg -3'
miRNA:   3'- gUGUACCGGGgGCCcGaaua-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 90124 0.66 0.884339
Target:  5'- -----cGCCCCCuaguGGGCggAUCcCAGCCc -3'
miRNA:   3'- guguacCGGGGG----CCCGaaUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 91684 0.7 0.679835
Target:  5'- cCGCAgcgGGCUCCUGGGCgugcugcgGUCUgcguGCCg -3'
miRNA:   3'- -GUGUa--CCGGGGGCCCGaa------UAGGu---CGG- -5'
14293 5' -58.8 NC_003521.1 + 102883 0.68 0.805161
Target:  5'- gCGCucgGGCuCCUCGGGCagGgaaccgcgacccgCCAGCCa -3'
miRNA:   3'- -GUGua-CCG-GGGGCCCGaaUa------------GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 104837 0.66 0.867825
Target:  5'- gACGcGGCCCCCcgacacgcuGGGCgagaucacgacccUGUCCAcGCCc -3'
miRNA:   3'- gUGUaCCGGGGG---------CCCGa------------AUAGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 114424 0.69 0.746433
Target:  5'- cCACAU--CCaCCCGGGCUUcgCCcugacGGCCg -3'
miRNA:   3'- -GUGUAccGG-GGGCCCGAAuaGG-----UCGG- -5'
14293 5' -58.8 NC_003521.1 + 119362 0.66 0.877598
Target:  5'- -cCAUGGacaCgCCGGGgaUGUCC-GCCg -3'
miRNA:   3'- guGUACCg--GgGGCCCgaAUAGGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 119775 0.67 0.856192
Target:  5'- ----cGGCCUCCaGGCUgcgGUCCAccuuccggcGCCa -3'
miRNA:   3'- guguaCCGGGGGcCCGAa--UAGGU---------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.