miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 120271 0.67 0.848678
Target:  5'- -cCcgGGCgcucCCCCGGGaccg-CCGGCCg -3'
miRNA:   3'- guGuaCCG----GGGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 123291 0.7 0.702043
Target:  5'- aGCGUcaGGUCCgCGGGCgacucggcguccaguUCCAGCCg -3'
miRNA:   3'- gUGUA--CCGGGgGCCCGaau------------AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 126778 0.66 0.877598
Target:  5'- gGCA-GGCCCUgGcGCUgcgcgugGUCCAGCUc -3'
miRNA:   3'- gUGUaCCGGGGgCcCGAa------UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 127241 0.66 0.870657
Target:  5'- -cCGUuGCCCCCGaGGC----CCAGCCc -3'
miRNA:   3'- guGUAcCGGGGGC-CCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 127281 0.68 0.764756
Target:  5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3'
miRNA:   3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 128358 0.68 0.77376
Target:  5'- gUAgGUGGCCCcgCCGGGCgcg-CCcaccagGGCCg -3'
miRNA:   3'- -GUgUACCGGG--GGCCCGaauaGG------UCGG- -5'
14293 5' -58.8 NC_003521.1 + 130161 0.68 0.782649
Target:  5'- aCGCGcUGGCCgaCCGGGCcgUGaCCGuGCCg -3'
miRNA:   3'- -GUGU-ACCGGg-GGCCCGa-AUaGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 136535 0.69 0.737129
Target:  5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3'
miRNA:   3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 137673 0.72 0.540876
Target:  5'- cUACGUGgagacgcgccugcuGCCCCUGGGCUcuccccaCCAGCCu -3'
miRNA:   3'- -GUGUAC--------------CGGGGGCCCGAaua----GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 138891 0.67 0.848678
Target:  5'- cCACGUGGaCCCCaccGGCgagUAcgCCGGCUc -3'
miRNA:   3'- -GUGUACC-GGGGgc-CCGa--AUa-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 139066 0.68 0.791414
Target:  5'- cCGCAgaucacccUGGCCUCgGGGCUggacuacgUGUUCGGCg -3'
miRNA:   3'- -GUGU--------ACCGGGGgCCCGA--------AUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 144867 0.7 0.703002
Target:  5'- cCGCG-GGUCCCCgaaccgcauccgugaGGGCUcugAUCCGGCUc -3'
miRNA:   3'- -GUGUaCCGGGGG---------------CCCGAa--UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 149739 0.66 0.890876
Target:  5'- gCGCAgacgGGCCCCUGuuGCgUUGUCCGGaCa -3'
miRNA:   3'- -GUGUa---CCGGGGGCc-CG-AAUAGGUCgG- -5'
14293 5' -58.8 NC_003521.1 + 153134 0.68 0.800047
Target:  5'- aCACG-GGCCuCUCGGGCgccUCCAcGCUc -3'
miRNA:   3'- -GUGUaCCGG-GGGCCCGaauAGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 164602 0.66 0.86352
Target:  5'- gACGUGcGCgCCCaGGGCgug-CCGGCg -3'
miRNA:   3'- gUGUAC-CGgGGG-CCCGaauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 174838 0.66 0.890876
Target:  5'- gACuUGGUgUCCGGcGUggccacGUCCAGCCa -3'
miRNA:   3'- gUGuACCGgGGGCC-CGaa----UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 174997 0.68 0.808542
Target:  5'- ---uUGGCCguCUCGGccuGCUUGUCCAGCa -3'
miRNA:   3'- guguACCGG--GGGCC---CGAAUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 175760 0.69 0.705878
Target:  5'- cCAUGUagGGUCCCCGGGCUcguUGUUagaggcauaccccaCAGCCu -3'
miRNA:   3'- -GUGUA--CCGGGGGCCCGA---AUAG--------------GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 178795 0.69 0.718279
Target:  5'- uGCAggacgGGCCCCCGGGCaccucguggUAUCUcGUg -3'
miRNA:   3'- gUGUa----CCGGGGGCCCGa--------AUAGGuCGg -5'
14293 5' -58.8 NC_003521.1 + 180128 0.69 0.727742
Target:  5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3'
miRNA:   3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.