miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 181734 0.66 0.884339
Target:  5'- gCACGcUGGCCaagCGGccGCgcgAUCCGGCCg -3'
miRNA:   3'- -GUGU-ACCGGgg-GCC--CGaa-UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 183516 0.66 0.884339
Target:  5'- cCACG-GGCCCUC--GCUUAUCCAccagucGCCg -3'
miRNA:   3'- -GUGUaCCGGGGGccCGAAUAGGU------CGG- -5'
14293 5' -58.8 NC_003521.1 + 186318 0.68 0.77376
Target:  5'- uGCAgauccUGGUCCacgCCGGGCcg--CCGGCCa -3'
miRNA:   3'- gUGU-----ACCGGG---GGCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 187612 0.7 0.69916
Target:  5'- gGCAcGGCCUgCCGGGCgag-CCgGGCCg -3'
miRNA:   3'- gUGUaCCGGG-GGCCCGaauaGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 191926 0.73 0.487716
Target:  5'- aCACAUGGUCCCCgGGGCccUGggCAGCg -3'
miRNA:   3'- -GUGUACCGGGGG-CCCGa-AUagGUCGg -5'
14293 5' -58.8 NC_003521.1 + 193550 0.67 0.840985
Target:  5'- uCGCcgGGaUCCUCGGGCg-GUuuGGCCa -3'
miRNA:   3'- -GUGuaCC-GGGGGCCCGaaUAggUCGG- -5'
14293 5' -58.8 NC_003521.1 + 194799 0.7 0.679835
Target:  5'- cCAUGUGGCCCUucaCGGuGCUg--CUGGCCg -3'
miRNA:   3'- -GUGUACCGGGG---GCC-CGAauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 195977 0.71 0.639834
Target:  5'- gGCGUGGUguaaauaCCCUGGGCagaggUAgacgCCGGCCu -3'
miRNA:   3'- gUGUACCG-------GGGGCCCGa----AUa---GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 196952 0.66 0.86352
Target:  5'- aGCGUGGgCgacggCCCGGGag---CCGGCCg -3'
miRNA:   3'- gUGUACCgG-----GGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 197386 0.67 0.840985
Target:  5'- gGCucUGGCUcgccgCCCGGGaCUgggUGUCUGGCCa -3'
miRNA:   3'- gUGu-ACCGG-----GGGCCC-GA---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 198801 0.68 0.808542
Target:  5'- uGCGUGGUgCCgGcGGCgucUGUCguGCCg -3'
miRNA:   3'- gUGUACCGgGGgC-CCGa--AUAGguCGG- -5'
14293 5' -58.8 NC_003521.1 + 198870 0.68 0.764756
Target:  5'- aACAgcuGCCCCCGGauGCacUGUCgCAGCCg -3'
miRNA:   3'- gUGUac-CGGGGGCC--CGa-AUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 201375 0.69 0.755644
Target:  5'- gACGcGGCCCucggcgCCGGGCUcggCCGGCa -3'
miRNA:   3'- gUGUaCCGGG------GGCCCGAauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 203951 0.66 0.86352
Target:  5'- gUACGUGGUCaCCC--GCUUG-CCGGCCc -3'
miRNA:   3'- -GUGUACCGG-GGGccCGAAUaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 205765 0.69 0.70875
Target:  5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3'
miRNA:   3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 207341 0.68 0.807699
Target:  5'- uCGCGUGGCgCCCgagaucuGGGUc--UCCAGUCa -3'
miRNA:   3'- -GUGUACCGgGGG-------CCCGaauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 207894 0.7 0.69916
Target:  5'- -----cGCCCuuGGGCUc-UCCGGCCg -3'
miRNA:   3'- guguacCGGGggCCCGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 210026 0.66 0.864242
Target:  5'- gGCG-GGCCCUCGGuGCgcuaccgcgcccacAUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGGGCC-CGaa------------UAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 212676 0.66 0.873457
Target:  5'- gGCAUGGUCgCCGccgucgccagggcaaGGCUgguggGUCgGGCCu -3'
miRNA:   3'- gUGUACCGGgGGC---------------CCGAa----UAGgUCGG- -5'
14293 5' -58.8 NC_003521.1 + 213019 0.7 0.689519
Target:  5'- -cCAUGGCg-CCGGGCgag-CCGGCCg -3'
miRNA:   3'- guGUACCGggGGCCCGaauaGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.