miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 239928 0.67 0.848678
Target:  5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3'
miRNA:   3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 239675 0.67 0.822643
Target:  5'- -cCGUGGCUCCCGGGgacggcagcgguucgUGUCCcgucGCCg -3'
miRNA:   3'- guGUACCGGGGGCCCga-------------AUAGGu---CGG- -5'
14293 5' -58.8 NC_003521.1 + 239464 0.69 0.718279
Target:  5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3'
miRNA:   3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 235466 0.7 0.674006
Target:  5'- aCGCGcgGGCCCUcucaCGGGCUUaccacuaucgccggaGUCgCGGCCg -3'
miRNA:   3'- -GUGUa-CCGGGG----GCCCGAA---------------UAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 233414 0.67 0.848678
Target:  5'- gGCuccUGGCCCCgGuGGCUccgaCGGCCu -3'
miRNA:   3'- gUGu--ACCGGGGgC-CCGAauagGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 227598 0.68 0.764756
Target:  5'- gGCAUGGCaggCuuGGGCg---CCGGUCg -3'
miRNA:   3'- gUGUACCGg--GggCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 226936 0.73 0.514482
Target:  5'- gCGCcgGGCCCCCcGGCgaaAUCCAuggcggcGCCg -3'
miRNA:   3'- -GUGuaCCGGGGGcCCGaa-UAGGU-------CGG- -5'
14293 5' -58.8 NC_003521.1 + 226858 0.68 0.764756
Target:  5'- gGCA-GGCCCaucaGGGC--GUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGgg--CCCGaaUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 224690 0.75 0.426887
Target:  5'- gGCGUGGCgCCCGGGCguguggaaguucacGUCCcGCCc -3'
miRNA:   3'- gUGUACCGgGGGCCCGaa------------UAGGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 222233 0.7 0.687585
Target:  5'- aCACGUGGCCCCuUGGGUacacaaaGGCCc -3'
miRNA:   3'- -GUGUACCGGGG-GCCCGaauagg-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 215051 0.72 0.572537
Target:  5'- cCGCGUGgaGCCCCUGGGCUg--CCuggugguGCCc -3'
miRNA:   3'- -GUGUAC--CGGGGGCCCGAauaGGu------CGG- -5'
14293 5' -58.8 NC_003521.1 + 213710 0.71 0.621236
Target:  5'- --uGUGGgCCUCGGGgaUGcCCAGCCa -3'
miRNA:   3'- gugUACCgGGGGCCCgaAUaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 213452 0.67 0.840985
Target:  5'- gGCcUGGCCCCCcGGCUggagCCuggugcuccaggAGCCc -3'
miRNA:   3'- gUGuACCGGGGGcCCGAaua-GG------------UCGG- -5'
14293 5' -58.8 NC_003521.1 + 213019 0.7 0.689519
Target:  5'- -cCAUGGCg-CCGGGCgag-CCGGCCg -3'
miRNA:   3'- guGUACCGggGGCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 212676 0.66 0.873457
Target:  5'- gGCAUGGUCgCCGccgucgccagggcaaGGCUgguggGUCgGGCCu -3'
miRNA:   3'- gUGUACCGGgGGC---------------CCGAa----UAGgUCGG- -5'
14293 5' -58.8 NC_003521.1 + 210026 0.66 0.864242
Target:  5'- gGCG-GGCCCUCGGuGCgcuaccgcgcccacAUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGGGCC-CGaa------------UAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 207894 0.7 0.69916
Target:  5'- -----cGCCCuuGGGCUc-UCCGGCCg -3'
miRNA:   3'- guguacCGGGggCCCGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 207341 0.68 0.807699
Target:  5'- uCGCGUGGCgCCCgagaucuGGGUc--UCCAGUCa -3'
miRNA:   3'- -GUGUACCGgGGG-------CCCGaauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 205765 0.69 0.70875
Target:  5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3'
miRNA:   3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 203951 0.66 0.86352
Target:  5'- gUACGUGGUCaCCC--GCUUG-CCGGCCc -3'
miRNA:   3'- -GUGUACCGG-GGGccCGAAUaGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.