miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 149739 0.66 0.890876
Target:  5'- gCGCAgacgGGCCCCUGuuGCgUUGUCCGGaCa -3'
miRNA:   3'- -GUGUa---CCGGGGGCc-CG-AAUAGGUCgG- -5'
14293 5' -58.8 NC_003521.1 + 144867 0.7 0.703002
Target:  5'- cCGCG-GGUCCCCgaaccgcauccgugaGGGCUcugAUCCGGCUc -3'
miRNA:   3'- -GUGUaCCGGGGG---------------CCCGAa--UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 139066 0.68 0.791414
Target:  5'- cCGCAgaucacccUGGCCUCgGGGCUggacuacgUGUUCGGCg -3'
miRNA:   3'- -GUGU--------ACCGGGGgCCCGA--------AUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 138891 0.67 0.848678
Target:  5'- cCACGUGGaCCCCaccGGCgagUAcgCCGGCUc -3'
miRNA:   3'- -GUGUACC-GGGGgc-CCGa--AUa-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 137673 0.72 0.540876
Target:  5'- cUACGUGgagacgcgccugcuGCCCCUGGGCUcuccccaCCAGCCu -3'
miRNA:   3'- -GUGUAC--------------CGGGGGCCCGAaua----GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 136535 0.69 0.737129
Target:  5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3'
miRNA:   3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 130161 0.68 0.782649
Target:  5'- aCGCGcUGGCCgaCCGGGCcgUGaCCGuGCCg -3'
miRNA:   3'- -GUGU-ACCGGg-GGCCCGa-AUaGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 128358 0.68 0.77376
Target:  5'- gUAgGUGGCCCcgCCGGGCgcg-CCcaccagGGCCg -3'
miRNA:   3'- -GUgUACCGGG--GGCCCGaauaGG------UCGG- -5'
14293 5' -58.8 NC_003521.1 + 127281 0.68 0.764756
Target:  5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3'
miRNA:   3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 127241 0.66 0.870657
Target:  5'- -cCGUuGCCCCCGaGGC----CCAGCCc -3'
miRNA:   3'- guGUAcCGGGGGC-CCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 126778 0.66 0.877598
Target:  5'- gGCA-GGCCCUgGcGCUgcgcgugGUCCAGCUc -3'
miRNA:   3'- gUGUaCCGGGGgCcCGAa------UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 123291 0.7 0.702043
Target:  5'- aGCGUcaGGUCCgCGGGCgacucggcguccaguUCCAGCCg -3'
miRNA:   3'- gUGUA--CCGGGgGCCCGaau------------AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 120271 0.67 0.848678
Target:  5'- -cCcgGGCgcucCCCCGGGaccg-CCGGCCg -3'
miRNA:   3'- guGuaCCG----GGGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 119775 0.67 0.856192
Target:  5'- ----cGGCCUCCaGGCUgcgGUCCAccuuccggcGCCa -3'
miRNA:   3'- guguaCCGGGGGcCCGAa--UAGGU---------CGG- -5'
14293 5' -58.8 NC_003521.1 + 119362 0.66 0.877598
Target:  5'- -cCAUGGacaCgCCGGGgaUGUCC-GCCg -3'
miRNA:   3'- guGUACCg--GgGGCCCgaAUAGGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 114424 0.69 0.746433
Target:  5'- cCACAU--CCaCCCGGGCUUcgCCcugacGGCCg -3'
miRNA:   3'- -GUGUAccGG-GGGCCCGAAuaGG-----UCGG- -5'
14293 5' -58.8 NC_003521.1 + 104837 0.66 0.867825
Target:  5'- gACGcGGCCCCCcgacacgcuGGGCgagaucacgacccUGUCCAcGCCc -3'
miRNA:   3'- gUGUaCCGGGGG---------CCCGa------------AUAGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 102883 0.68 0.805161
Target:  5'- gCGCucgGGCuCCUCGGGCagGgaaccgcgacccgCCAGCCa -3'
miRNA:   3'- -GUGua-CCG-GGGGCCCGaaUa------------GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 91684 0.7 0.679835
Target:  5'- cCGCAgcgGGCUCCUGGGCgugcugcgGUCUgcguGCCg -3'
miRNA:   3'- -GUGUa--CCGGGGGCCCGaa------UAGGu---CGG- -5'
14293 5' -58.8 NC_003521.1 + 90124 0.66 0.884339
Target:  5'- -----cGCCCCCuaguGGGCggAUCcCAGCCc -3'
miRNA:   3'- guguacCGGGGG----CCCGaaUAG-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.