miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 227598 0.68 0.764756
Target:  5'- gGCAUGGCaggCuuGGGCg---CCGGUCg -3'
miRNA:   3'- gUGUACCGg--GggCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 175760 0.69 0.705878
Target:  5'- cCAUGUagGGUCCCCGGGCUcguUGUUagaggcauaccccaCAGCCu -3'
miRNA:   3'- -GUGUA--CCGGGGGCCCGA---AUAG--------------GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 205765 0.69 0.70875
Target:  5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3'
miRNA:   3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 178795 0.69 0.718279
Target:  5'- uGCAggacgGGCCCCCGGGCaccucguggUAUCUcGUg -3'
miRNA:   3'- gUGUa----CCGGGGGCCCGa--------AUAGGuCGg -5'
14293 5' -58.8 NC_003521.1 + 239464 0.69 0.718279
Target:  5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3'
miRNA:   3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 85415 0.69 0.737129
Target:  5'- aGCA-GGCCUCCGGuGC----CCAGCCc -3'
miRNA:   3'- gUGUaCCGGGGGCC-CGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 71293 0.69 0.746433
Target:  5'- gGCAcgGGCCCCUGGGgca--CCAGCa -3'
miRNA:   3'- gUGUa-CCGGGGGCCCgaauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 4544 0.69 0.755644
Target:  5'- gCGCAgGGUCCCCGGGga-GUCacuaCGGCCg -3'
miRNA:   3'- -GUGUaCCGGGGGCCCgaaUAG----GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 226858 0.68 0.764756
Target:  5'- gGCA-GGCCCaucaGGGC--GUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGgg--CCCGaaUAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 123291 0.7 0.702043
Target:  5'- aGCGUcaGGUCCgCGGGCgacucggcguccaguUCCAGCCg -3'
miRNA:   3'- gUGUA--CCGGGgGCCCGaau------------AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 213019 0.7 0.689519
Target:  5'- -cCAUGGCg-CCGGGCgag-CCGGCCg -3'
miRNA:   3'- guGUACCGggGGCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 194799 0.7 0.679835
Target:  5'- cCAUGUGGCCCUucaCGGuGCUg--CUGGCCg -3'
miRNA:   3'- -GUGUACCGGGG---GCC-CGAauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 191926 0.73 0.487716
Target:  5'- aCACAUGGUCCCCgGGGCccUGggCAGCg -3'
miRNA:   3'- -GUGUACCGGGGG-CCCGa-AUagGUCGg -5'
14293 5' -58.8 NC_003521.1 + 226936 0.73 0.514482
Target:  5'- gCGCcgGGCCCCCcGGCgaaAUCCAuggcggcGCCg -3'
miRNA:   3'- -GUGuaCCGGGGGcCCGaa-UAGGU-------CGG- -5'
14293 5' -58.8 NC_003521.1 + 58745 0.72 0.572537
Target:  5'- uGCAgcaGCCaCUgCGGGCUgagGUCCAGCCa -3'
miRNA:   3'- gUGUac-CGG-GG-GCCCGAa--UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 213710 0.71 0.621236
Target:  5'- --uGUGGgCCUCGGGgaUGcCCAGCCa -3'
miRNA:   3'- gugUACCgGGGGCCCgaAUaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 33082 0.7 0.650596
Target:  5'- aAgAUGGCCUucugcaCGGGCUccagCCAGCCg -3'
miRNA:   3'- gUgUACCGGGg-----GCCCGAaua-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 235466 0.7 0.674006
Target:  5'- aCGCGcgGGCCCUcucaCGGGCUUaccacuaucgccggaGUCgCGGCCg -3'
miRNA:   3'- -GUGUa-CCGGGG----GCCCGAA---------------UAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 91684 0.7 0.679835
Target:  5'- cCGCAgcgGGCUCCUGGGCgugcugcgGUCUgcguGCCg -3'
miRNA:   3'- -GUGUa--CCGGGGGCCCGaa------UAGGu---CGG- -5'
14293 5' -58.8 NC_003521.1 + 82696 0.7 0.679835
Target:  5'- cCACAUGGUCgaUgCGGGCcaaGUCCAGCa -3'
miRNA:   3'- -GUGUACCGG--GgGCCCGaa-UAGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.