Results 41 - 60 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 239464 | 0.69 | 0.718279 |
Target: 5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3' miRNA: 3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 178795 | 0.69 | 0.718279 |
Target: 5'- uGCAggacgGGCCCCCGGGCaccucguggUAUCUcGUg -3' miRNA: 3'- gUGUa----CCGGGGGCCCGa--------AUAGGuCGg -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 205765 | 0.69 | 0.70875 |
Target: 5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3' miRNA: 3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 175760 | 0.69 | 0.705878 |
Target: 5'- cCAUGUagGGUCCCCGGGCUcguUGUUagaggcauaccccaCAGCCu -3' miRNA: 3'- -GUGUA--CCGGGGGCCCGA---AUAG--------------GUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 144867 | 0.7 | 0.703002 |
Target: 5'- cCGCG-GGUCCCCgaaccgcauccgugaGGGCUcugAUCCGGCUc -3' miRNA: 3'- -GUGUaCCGGGGG---------------CCCGAa--UAGGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 77947 | 0.69 | 0.70875 |
Target: 5'- gACAUGaaGCCCugCUGGGuCUUGgagCCGGCCg -3' miRNA: 3'- gUGUAC--CGGG--GGCCC-GAAUa--GGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 52853 | 0.69 | 0.718279 |
Target: 5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3' miRNA: 3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 39236 | 0.69 | 0.718279 |
Target: 5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3' miRNA: 3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 180128 | 0.69 | 0.727742 |
Target: 5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3' miRNA: 3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 136535 | 0.69 | 0.737129 |
Target: 5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3' miRNA: 3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 43423 | 0.69 | 0.746433 |
Target: 5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3' miRNA: 3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 207894 | 0.7 | 0.69916 |
Target: 5'- -----cGCCCuuGGGCUc-UCCGGCCg -3' miRNA: 3'- guguacCGGGggCCCGAauAGGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 187612 | 0.7 | 0.69916 |
Target: 5'- gGCAcGGCCUgCCGGGCgag-CCgGGCCg -3' miRNA: 3'- gUGUaCCGGG-GGCCCGaauaGG-UCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 6060 | 0.7 | 0.697236 |
Target: 5'- ----cGGCCCCgcaGGGCgugaucacgCCAGCCg -3' miRNA: 3'- guguaCCGGGGg--CCCGaaua-----GGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 222233 | 0.7 | 0.687585 |
Target: 5'- aCACGUGGCCCCuUGGGUacacaaaGGCCc -3' miRNA: 3'- -GUGUACCGGGG-GCCCGaauagg-UCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 37397 | 0.7 | 0.660365 |
Target: 5'- gGCGggGGCgCCCGGGCcUUGUgcgaCGGCCu -3' miRNA: 3'- gUGUa-CCGgGGGCCCG-AAUAg---GUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 195977 | 0.71 | 0.639834 |
Target: 5'- gGCGUGGUguaaauaCCCUGGGCagaggUAgacgCCGGCCu -3' miRNA: 3'- gUGUACCG-------GGGGCCCGa----AUa---GGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 215051 | 0.72 | 0.572537 |
Target: 5'- cCGCGUGgaGCCCCUGGGCUg--CCuggugguGCCc -3' miRNA: 3'- -GUGUAC--CGGGGGCCCGAauaGGu------CGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 137673 | 0.72 | 0.540876 |
Target: 5'- cUACGUGgagacgcgccugcuGCCCCUGGGCUcuccccaCCAGCCu -3' miRNA: 3'- -GUGUAC--------------CGGGGGCCCGAaua----GGUCGG- -5' |
|||||||
14293 | 5' | -58.8 | NC_003521.1 | + | 174838 | 0.66 | 0.890876 |
Target: 5'- gACuUGGUgUCCGGcGUggccacGUCCAGCCa -3' miRNA: 3'- gUGuACCGgGGGCC-CGaa----UAGGUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home