miRNA display CGI


Results 81 - 93 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 52853 0.69 0.718279
Target:  5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3'
miRNA:   3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 39236 0.69 0.718279
Target:  5'- aGCgGUGGCCCgCGGcGC--GUUCAGCCc -3'
miRNA:   3'- gUG-UACCGGGgGCC-CGaaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 130161 0.68 0.782649
Target:  5'- aCGCGcUGGCCgaCCGGGCcgUGaCCGuGCCg -3'
miRNA:   3'- -GUGU-ACCGGg-GGCCCGa-AUaGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 128358 0.68 0.77376
Target:  5'- gUAgGUGGCCCcgCCGGGCgcg-CCcaccagGGCCg -3'
miRNA:   3'- -GUgUACCGGG--GGCCCGaauaGG------UCGG- -5'
14293 5' -58.8 NC_003521.1 + 186318 0.68 0.77376
Target:  5'- uGCAgauccUGGUCCacgCCGGGCcg--CCGGCCa -3'
miRNA:   3'- gUGU-----ACCGGG---GGCCCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 127281 0.68 0.764756
Target:  5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3'
miRNA:   3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 198870 0.68 0.764756
Target:  5'- aACAgcuGCCCCCGGauGCacUGUCgCAGCCg -3'
miRNA:   3'- gUGUac-CGGGGGCC--CGa-AUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 201375 0.69 0.755644
Target:  5'- gACGcGGCCCucggcgCCGGGCUcggCCGGCa -3'
miRNA:   3'- gUGUaCCGGG------GGCCCGAauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 114424 0.69 0.746433
Target:  5'- cCACAU--CCaCCCGGGCUUcgCCcugacGGCCg -3'
miRNA:   3'- -GUGUAccGG-GGGCCCGAAuaGG-----UCGG- -5'
14293 5' -58.8 NC_003521.1 + 43423 0.69 0.746433
Target:  5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3'
miRNA:   3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5'
14293 5' -58.8 NC_003521.1 + 136535 0.69 0.737129
Target:  5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3'
miRNA:   3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 180128 0.69 0.727742
Target:  5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3'
miRNA:   3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 3098 0.99 0.011956
Target:  5'- uCACAUGGCCCCCGGGUUcAUCCAGCCc -3'
miRNA:   3'- -GUGUACCGGGGGCCCGAaUAGGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.