miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 3098 0.99 0.011956
Target:  5'- uCACAUGGCCCCCGGGUUcAUCCAGCCc -3'
miRNA:   3'- -GUGUACCGGGGGCCCGAaUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 201375 0.69 0.755644
Target:  5'- gACGcGGCCCucggcgCCGGGCUcggCCGGCa -3'
miRNA:   3'- gUGUaCCGGG------GGCCCGAauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 127281 0.68 0.764756
Target:  5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3'
miRNA:   3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 174838 0.66 0.890876
Target:  5'- gACuUGGUgUCCGGcGUggccacGUCCAGCCa -3'
miRNA:   3'- gUGuACCGgGGGCC-CGaa----UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 37397 0.7 0.660365
Target:  5'- gGCGggGGCgCCCGGGCcUUGUgcgaCGGCCu -3'
miRNA:   3'- gUGUa-CCGgGGGCCCG-AAUAg---GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 222233 0.7 0.687585
Target:  5'- aCACGUGGCCCCuUGGGUacacaaaGGCCc -3'
miRNA:   3'- -GUGUACCGGGG-GCCCGaauagg-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 187612 0.7 0.69916
Target:  5'- gGCAcGGCCUgCCGGGCgag-CCgGGCCg -3'
miRNA:   3'- gUGUaCCGGG-GGCCCGaauaGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 207894 0.7 0.69916
Target:  5'- -----cGCCCuuGGGCUc-UCCGGCCg -3'
miRNA:   3'- guguacCGGGggCCCGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 52853 0.69 0.718279
Target:  5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3'
miRNA:   3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 114424 0.69 0.746433
Target:  5'- cCACAU--CCaCCCGGGCUUcgCCcugacGGCCg -3'
miRNA:   3'- -GUGUAccGG-GGGCCCGAAuaGG-----UCGG- -5'
14293 5' -58.8 NC_003521.1 + 180128 0.69 0.727742
Target:  5'- cCGCGccGCCCCCGGGUcccccgCgCGGCCg -3'
miRNA:   3'- -GUGUacCGGGGGCCCGaaua--G-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 77947 0.69 0.70875
Target:  5'- gACAUGaaGCCCugCUGGGuCUUGgagCCGGCCg -3'
miRNA:   3'- gUGUAC--CGGG--GGCCC-GAAUa--GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 137673 0.72 0.540876
Target:  5'- cUACGUGgagacgcgccugcuGCCCCUGGGCUcuccccaCCAGCCu -3'
miRNA:   3'- -GUGUAC--------------CGGGGGCCCGAaua----GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 136535 0.69 0.737129
Target:  5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3'
miRNA:   3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 215051 0.72 0.572537
Target:  5'- cCGCGUGgaGCCCCUGGGCUg--CCuggugguGCCc -3'
miRNA:   3'- -GUGUAC--CGGGGGCCCGAauaGGu------CGG- -5'
14293 5' -58.8 NC_003521.1 + 144867 0.7 0.703002
Target:  5'- cCGCG-GGUCCCCgaaccgcauccgugaGGGCUcugAUCCGGCUc -3'
miRNA:   3'- -GUGUaCCGGGGG---------------CCCGAa--UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 43423 0.69 0.746433
Target:  5'- -uCGUGGCCagacacccaguCCCGGGCgg--CgAGCCa -3'
miRNA:   3'- guGUACCGG-----------GGGCCCGaauaGgUCGG- -5'
14293 5' -58.8 NC_003521.1 + 198870 0.68 0.764756
Target:  5'- aACAgcuGCCCCCGGauGCacUGUCgCAGCCg -3'
miRNA:   3'- gUGUac-CGGGGGCC--CGa-AUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 195977 0.71 0.639834
Target:  5'- gGCGUGGUguaaauaCCCUGGGCagaggUAgacgCCGGCCu -3'
miRNA:   3'- gUGUACCG-------GGGGCCCGa----AUa---GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 6060 0.7 0.697236
Target:  5'- ----cGGCCCCgcaGGGCgugaucacgCCAGCCg -3'
miRNA:   3'- guguaCCGGGGg--CCCGaaua-----GGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.