miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 130161 0.68 0.782649
Target:  5'- aCGCGcUGGCCgaCCGGGCcgUGaCCGuGCCg -3'
miRNA:   3'- -GUGU-ACCGGg-GGCCCGa-AUaGGU-CGG- -5'
14293 5' -58.8 NC_003521.1 + 127281 0.68 0.764756
Target:  5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3'
miRNA:   3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 77947 0.69 0.70875
Target:  5'- gACAUGaaGCCCugCUGGGuCUUGgagCCGGCCg -3'
miRNA:   3'- gUGUAC--CGGG--GGCCC-GAAUa--GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 195977 0.71 0.639834
Target:  5'- gGCGUGGUguaaauaCCCUGGGCagaggUAgacgCCGGCCu -3'
miRNA:   3'- gUGUACCG-------GGGGCCCGa----AUa---GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 39701 0.67 0.848678
Target:  5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3'
miRNA:   3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 198801 0.68 0.808542
Target:  5'- uGCGUGGUgCCgGcGGCgucUGUCguGCCg -3'
miRNA:   3'- gUGUACCGgGGgC-CCGa--AUAGguCGG- -5'
14293 5' -58.8 NC_003521.1 + 201375 0.69 0.755644
Target:  5'- gACGcGGCCCucggcgCCGGGCUcggCCGGCa -3'
miRNA:   3'- gUGUaCCGGG------GGCCCGAauaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 215051 0.72 0.572537
Target:  5'- cCGCGUGgaGCCCCUGGGCUg--CCuggugguGCCc -3'
miRNA:   3'- -GUGUAC--CGGGGGCCCGAauaGGu------CGG- -5'
14293 5' -58.8 NC_003521.1 + 207341 0.68 0.807699
Target:  5'- uCGCGUGGCgCCCgagaucuGGGUc--UCCAGUCa -3'
miRNA:   3'- -GUGUACCGgGGG-------CCCGaauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 137673 0.72 0.540876
Target:  5'- cUACGUGgagacgcgccugcuGCCCCUGGGCUcuccccaCCAGCCu -3'
miRNA:   3'- -GUGUAC--------------CGGGGGCCCGAaua----GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 198870 0.68 0.764756
Target:  5'- aACAgcuGCCCCCGGauGCacUGUCgCAGCCg -3'
miRNA:   3'- gUGUac-CGGGGGCC--CGa-AUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 48005 0.68 0.782649
Target:  5'- cCGCcgGGCUUCUGcGGCUgcugCCAGCg -3'
miRNA:   3'- -GUGuaCCGGGGGC-CCGAaua-GGUCGg -5'
14293 5' -58.8 NC_003521.1 + 136535 0.69 0.737129
Target:  5'- gCGCAga-UCCUCGGGCgugaUAUCCAGCUg -3'
miRNA:   3'- -GUGUaccGGGGGCCCGa---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 52853 0.69 0.718279
Target:  5'- gACGacUGGUCCUCGGuCU--UCCAGCCg -3'
miRNA:   3'- gUGU--ACCGGGGGCCcGAauAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 187612 0.7 0.69916
Target:  5'- gGCAcGGCCUgCCGGGCgag-CCgGGCCg -3'
miRNA:   3'- gUGUaCCGGG-GGCCCGaauaGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 37397 0.7 0.660365
Target:  5'- gGCGggGGCgCCCGGGCcUUGUgcgaCGGCCu -3'
miRNA:   3'- gUGUa-CCGgGGGCCCG-AAUAg---GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 210026 0.66 0.864242
Target:  5'- gGCG-GGCCCUCGGuGCgcuaccgcgcccacAUCCAGCg -3'
miRNA:   3'- gUGUaCCGGGGGCC-CGaa------------UAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 203951 0.66 0.86352
Target:  5'- gUACGUGGUCaCCC--GCUUG-CCGGCCc -3'
miRNA:   3'- -GUGUACCGG-GGGccCGAAUaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 213452 0.67 0.840985
Target:  5'- gGCcUGGCCCCCcGGCUggagCCuggugcuccaggAGCCc -3'
miRNA:   3'- gUGuACCGGGGGcCCGAaua-GG------------UCGG- -5'
14293 5' -58.8 NC_003521.1 + 174997 0.68 0.808542
Target:  5'- ---uUGGCCguCUCGGccuGCUUGUCCAGCa -3'
miRNA:   3'- guguACCGG--GGGCC---CGAAUAGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.