miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 181734 0.66 0.884339
Target:  5'- gCACGcUGGCCaagCGGccGCgcgAUCCGGCCg -3'
miRNA:   3'- -GUGU-ACCGGgg-GCC--CGaa-UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 198870 0.68 0.764756
Target:  5'- aACAgcuGCCCCCGGauGCacUGUCgCAGCCg -3'
miRNA:   3'- gUGUac-CGGGGGCC--CGa-AUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 149739 0.66 0.890876
Target:  5'- gCGCAgacgGGCCCCUGuuGCgUUGUCCGGaCa -3'
miRNA:   3'- -GUGUa---CCGGGGGCc-CG-AAUAGGUCgG- -5'
14293 5' -58.8 NC_003521.1 + 127281 0.68 0.764756
Target:  5'- gCugGUGGUcgUCCCGGcGCgagggAUCCcAGCCg -3'
miRNA:   3'- -GugUACCG--GGGGCC-CGaa---UAGG-UCGG- -5'
14293 5' -58.8 NC_003521.1 + 39701 0.67 0.848678
Target:  5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3'
miRNA:   3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 203951 0.66 0.86352
Target:  5'- gUACGUGGUCaCCC--GCUUG-CCGGCCc -3'
miRNA:   3'- -GUGUACCGG-GGGccCGAAUaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 16959 0.66 0.890876
Target:  5'- aACGUGGUCCCgaGGGa-----CAGCCg -3'
miRNA:   3'- gUGUACCGGGGg-CCCgaauagGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 19738 0.67 0.840985
Target:  5'- aGCGUGGCggugacggCgUCGGGCUUccacUUCAGCCa -3'
miRNA:   3'- gUGUACCG--------GgGGCCCGAAu---AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 14435 0.66 0.890876
Target:  5'- gACGUGGUgcacacggCCCUGcGGCggcgUCAGCCg -3'
miRNA:   3'- gUGUACCG--------GGGGC-CCGaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 235466 0.7 0.674006
Target:  5'- aCGCGcgGGCCCUcucaCGGGCUUaccacuaucgccggaGUCgCGGCCg -3'
miRNA:   3'- -GUGUa-CCGGGG----GCCCGAA---------------UAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 239928 0.67 0.848678
Target:  5'- cCAgAUGGUgCCCauGGCUUGguauUCCAGCUc -3'
miRNA:   3'- -GUgUACCGgGGGc-CCGAAU----AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 175760 0.69 0.705878
Target:  5'- cCAUGUagGGUCCCCGGGCUcguUGUUagaggcauaccccaCAGCCu -3'
miRNA:   3'- -GUGUA--CCGGGGGCCCGA---AUAG--------------GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 233414 0.67 0.848678
Target:  5'- gGCuccUGGCCCCgGuGGCUccgaCGGCCu -3'
miRNA:   3'- gUGu--ACCGGGGgC-CCGAauagGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 197386 0.67 0.840985
Target:  5'- gGCucUGGCUcgccgCCCGGGaCUgggUGUCUGGCCa -3'
miRNA:   3'- gUGu-ACCGG-----GGGCCC-GA---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 193550 0.67 0.840985
Target:  5'- uCGCcgGGaUCCUCGGGCg-GUuuGGCCa -3'
miRNA:   3'- -GUGuaCC-GGGGGCCCGaaUAggUCGG- -5'
14293 5' -58.8 NC_003521.1 + 67938 0.67 0.833119
Target:  5'- gACAUGG-CCCUGGGCUcuUGgcucUUCGGCa -3'
miRNA:   3'- gUGUACCgGGGGCCCGA--AU----AGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 239675 0.67 0.822643
Target:  5'- -cCGUGGCUCCCGGGgacggcagcgguucgUGUCCcgucGCCg -3'
miRNA:   3'- guGUACCGGGGGCCCga-------------AUAGGu---CGG- -5'
14293 5' -58.8 NC_003521.1 + 33009 0.67 0.81689
Target:  5'- cCGCA-GGCUCUCGGccaGCUUGaCCAGCg -3'
miRNA:   3'- -GUGUaCCGGGGGCC---CGAAUaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 178795 0.69 0.718279
Target:  5'- uGCAggacgGGCCCCCGGGCaccucguggUAUCUcGUg -3'
miRNA:   3'- gUGUa----CCGGGGGCCCGa--------AUAGGuCGg -5'
14293 5' -58.8 NC_003521.1 + 205765 0.69 0.70875
Target:  5'- cCGCAUGGCCCgCUGGaaguaccaaccGacgGUCCAGCUg -3'
miRNA:   3'- -GUGUACCGGG-GGCC-----------CgaaUAGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.