miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14293 5' -58.8 NC_003521.1 + 123291 0.7 0.702043
Target:  5'- aGCGUcaGGUCCgCGGGCgacucggcguccaguUCCAGCCg -3'
miRNA:   3'- gUGUA--CCGGGgGCCCGaau------------AGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 194799 0.7 0.679835
Target:  5'- cCAUGUGGCCCUucaCGGuGCUg--CUGGCCg -3'
miRNA:   3'- -GUGUACCGGGG---GCC-CGAauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 235466 0.7 0.674006
Target:  5'- aCGCGcgGGCCCUcucaCGGGCUUaccacuaucgccggaGUCgCGGCCg -3'
miRNA:   3'- -GUGUa-CCGGGG----GCCCGAA---------------UAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 33082 0.7 0.650596
Target:  5'- aAgAUGGCCUucugcaCGGGCUccagCCAGCCg -3'
miRNA:   3'- gUgUACCGGGg-----GCCCGAaua-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 213710 0.71 0.621236
Target:  5'- --uGUGGgCCUCGGGgaUGcCCAGCCa -3'
miRNA:   3'- gugUACCgGGGGCCCgaAUaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 33009 0.67 0.81689
Target:  5'- cCGCA-GGCUCUCGGccaGCUUGaCCAGCg -3'
miRNA:   3'- -GUGUaCCGGGGGCC---CGAAUaGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 239675 0.67 0.822643
Target:  5'- -cCGUGGCUCCCGGGgacggcagcgguucgUGUCCcgucGCCg -3'
miRNA:   3'- guGUACCGGGGGCCCga-------------AUAGGu---CGG- -5'
14293 5' -58.8 NC_003521.1 + 55070 0.66 0.890876
Target:  5'- ----cGGCCCCUaGGCgc-UCCGGCg -3'
miRNA:   3'- guguaCCGGGGGcCCGaauAGGUCGg -5'
14293 5' -58.8 NC_003521.1 + 32384 0.66 0.885002
Target:  5'- gCGCGUGGCcagguCCUCGGGCgugcgacacagCAGCCc -3'
miRNA:   3'- -GUGUACCG-----GGGGCCCGaauag------GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 90124 0.66 0.884339
Target:  5'- -----cGCCCCCuaguGGGCggAUCcCAGCCc -3'
miRNA:   3'- guguacCGGGGG----CCCGaaUAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 20911 0.66 0.884339
Target:  5'- aGCA-GGUCCCCGGGga---CCGGUCu -3'
miRNA:   3'- gUGUaCCGGGGGCCCgaauaGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 119362 0.66 0.877598
Target:  5'- -cCAUGGacaCgCCGGGgaUGUCC-GCCg -3'
miRNA:   3'- guGUACCg--GgGGCCCgaAUAGGuCGG- -5'
14293 5' -58.8 NC_003521.1 + 13602 0.66 0.877598
Target:  5'- uCugGUGGgUgCCGGGCUcuUCgUAGCCc -3'
miRNA:   3'- -GugUACCgGgGGCCCGAauAG-GUCGG- -5'
14293 5' -58.8 NC_003521.1 + 126778 0.66 0.877598
Target:  5'- gGCA-GGCCCUgGcGCUgcgcgugGUCCAGCUc -3'
miRNA:   3'- gUGUaCCGGGGgCcCGAa------UAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 27425 0.66 0.870657
Target:  5'- gCACGUaGGCCUCCaGGCagc-CCAGgCCg -3'
miRNA:   3'- -GUGUA-CCGGGGGcCCGaauaGGUC-GG- -5'
14293 5' -58.8 NC_003521.1 + 138891 0.67 0.848678
Target:  5'- cCACGUGGaCCCCaccGGCgagUAcgCCGGCUc -3'
miRNA:   3'- -GUGUACC-GGGGgc-CCGa--AUa-GGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 233414 0.67 0.848678
Target:  5'- gGCuccUGGCCCCgGuGGCUccgaCGGCCu -3'
miRNA:   3'- gUGu--ACCGGGGgC-CCGAauagGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 197386 0.67 0.840985
Target:  5'- gGCucUGGCUcgccgCCCGGGaCUgggUGUCUGGCCa -3'
miRNA:   3'- gUGu-ACCGG-----GGGCCC-GA---AUAGGUCGG- -5'
14293 5' -58.8 NC_003521.1 + 193550 0.67 0.840985
Target:  5'- uCGCcgGGaUCCUCGGGCg-GUuuGGCCa -3'
miRNA:   3'- -GUGuaCC-GGGGGCCCGaaUAggUCGG- -5'
14293 5' -58.8 NC_003521.1 + 67938 0.67 0.833119
Target:  5'- gACAUGG-CCCUGGGCUcuUGgcucUUCGGCa -3'
miRNA:   3'- gUGUACCgGGGGCCCGA--AU----AGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.