miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14294 3' -53.3 NC_003521.1 + 234391 0.66 0.987365
Target:  5'- uGCUGUu---GUcGCAGCGGCCcCCCg -3'
miRNA:   3'- uUGACGuuguCAaCGUCGUUGGcGGG- -5'
14294 3' -53.3 NC_003521.1 + 44301 0.66 0.987365
Target:  5'- gAGCUGgGcgGGUUGCuGUGGCCGCUg -3'
miRNA:   3'- -UUGACgUugUCAACGuCGUUGGCGGg -5'
14294 3' -53.3 NC_003521.1 + 162346 0.66 0.987365
Target:  5'- cGACUGCGGgcGUggGCGcGCAGCCcCCCg -3'
miRNA:   3'- -UUGACGUUguCAa-CGU-CGUUGGcGGG- -5'
14294 3' -53.3 NC_003521.1 + 238728 0.66 0.987365
Target:  5'- cACcgGCAGCAGUUccaGCAGCAGaaGUCg -3'
miRNA:   3'- uUGa-CGUUGUCAA---CGUCGUUggCGGg -5'
14294 3' -53.3 NC_003521.1 + 49550 0.66 0.987365
Target:  5'- uGCUGCAcaACcuGUucUGCGGCuGCCGCUUc -3'
miRNA:   3'- uUGACGU--UGu-CA--ACGUCGuUGGCGGG- -5'
14294 3' -53.3 NC_003521.1 + 184877 0.66 0.987365
Target:  5'- gGGCUGCAcACGG-UGCu-CAugCGCCUg -3'
miRNA:   3'- -UUGACGU-UGUCaACGucGUugGCGGG- -5'
14294 3' -53.3 NC_003521.1 + 165626 0.66 0.987365
Target:  5'- --gUGCAccacggugaacACGGUguugaGCAGCAGCaCGCCg -3'
miRNA:   3'- uugACGU-----------UGUCAa----CGUCGUUG-GCGGg -5'
14294 3' -53.3 NC_003521.1 + 123570 0.66 0.987365
Target:  5'- cGGCgGUGGCGGgaugGCGGCGgcgccgggaGCCGCCg -3'
miRNA:   3'- -UUGaCGUUGUCaa--CGUCGU---------UGGCGGg -5'
14294 3' -53.3 NC_003521.1 + 38501 0.66 0.987365
Target:  5'- cACcgGCAGCAGUUccaGCAGCAGaaGUCg -3'
miRNA:   3'- uUGa-CGUUGUCAA---CGUCGUUggCGGg -5'
14294 3' -53.3 NC_003521.1 + 107739 0.66 0.987365
Target:  5'- uGCUGUAAcCAG-UGUGGCGGCUGCg- -3'
miRNA:   3'- uUGACGUU-GUCaACGUCGUUGGCGgg -5'
14294 3' -53.3 NC_003521.1 + 124876 0.66 0.987365
Target:  5'- cGGCgGCAGCAGgcaCAGCgcgUCGCCCu -3'
miRNA:   3'- -UUGaCGUUGUCaacGUCGuu-GGCGGG- -5'
14294 3' -53.3 NC_003521.1 + 88929 0.66 0.986408
Target:  5'- ---cGCGACAGcuucgggaaacugcUGCAGCAcAgCGCCCg -3'
miRNA:   3'- uugaCGUUGUCa-------------ACGUCGU-UgGCGGG- -5'
14294 3' -53.3 NC_003521.1 + 235212 0.66 0.98574
Target:  5'- cGACUGCGACgAGUgGCAGUcgcaccucuACCGCg- -3'
miRNA:   3'- -UUGACGUUG-UCAaCGUCGu--------UGGCGgg -5'
14294 3' -53.3 NC_003521.1 + 14636 0.66 0.98574
Target:  5'- --gUGCAGCAGcUGCAGUgcguCUgGCCCu -3'
miRNA:   3'- uugACGUUGUCaACGUCGuu--GG-CGGG- -5'
14294 3' -53.3 NC_003521.1 + 120781 0.66 0.98574
Target:  5'- cACUGC-GCGGUggGCGagcGCGACCaGCUCa -3'
miRNA:   3'- uUGACGuUGUCAa-CGU---CGUUGG-CGGG- -5'
14294 3' -53.3 NC_003521.1 + 136619 0.66 0.98574
Target:  5'- gGGCUGCAGCA---GCAcGUAAUCGgCCa -3'
miRNA:   3'- -UUGACGUUGUcaaCGU-CGUUGGCgGG- -5'
14294 3' -53.3 NC_003521.1 + 83941 0.66 0.98574
Target:  5'- --gUGCcauCGG--GCAGCGGCCGCCg -3'
miRNA:   3'- uugACGuu-GUCaaCGUCGUUGGCGGg -5'
14294 3' -53.3 NC_003521.1 + 139304 0.66 0.98557
Target:  5'- gAGCUGCAGCgccugcuGGUcgGCcGCGucugGCCGCCg -3'
miRNA:   3'- -UUGACGUUG-------UCAa-CGuCGU----UGGCGGg -5'
14294 3' -53.3 NC_003521.1 + 45206 0.66 0.985223
Target:  5'- -cCUGCGACGcaucuaCAGCAugaugaucgaaggcGCCGCCCg -3'
miRNA:   3'- uuGACGUUGUcaac--GUCGU--------------UGGCGGG- -5'
14294 3' -53.3 NC_003521.1 + 36771 0.66 0.985223
Target:  5'- cGACUGCGGCGacugGCAGgGccacgcgcugcggaGCCGCUCg -3'
miRNA:   3'- -UUGACGUUGUcaa-CGUCgU--------------UGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.