miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14294 5' -64.6 NC_003521.1 + 155193 0.66 0.681147
Target:  5'- cCGGGgGGgaggugcacgaccucUCGGCCCUcuucGCGCCCucGGUg -3'
miRNA:   3'- uGCCUgCC---------------GGCCGGGA----UGCGGGu-CCG- -5'
14294 5' -64.6 NC_003521.1 + 162153 0.66 0.677439
Target:  5'- gACGG-CGGCUucCCCUGCGCCgAGaaGCc -3'
miRNA:   3'- -UGCCuGCCGGccGGGAUGCGGgUC--CG- -5'
14294 5' -64.6 NC_003521.1 + 182175 0.66 0.677439
Target:  5'- gACGGACGGCCGGC---GCGU--GGGg -3'
miRNA:   3'- -UGCCUGCCGGCCGggaUGCGggUCCg -5'
14294 5' -64.6 NC_003521.1 + 45436 0.66 0.677439
Target:  5'- uCGGcGCGGUCauGGCCU--CGCCguGGCg -3'
miRNA:   3'- uGCC-UGCCGG--CCGGGauGCGGguCCG- -5'
14294 5' -64.6 NC_003521.1 + 54496 0.66 0.677439
Target:  5'- gAUGGcCGG-CGGCCCgGCGUggaCCAGGa -3'
miRNA:   3'- -UGCCuGCCgGCCGGGaUGCG---GGUCCg -5'
14294 5' -64.6 NC_003521.1 + 169457 0.66 0.677439
Target:  5'- gGCGG-CGGCgGGUUCguCGC-CAGGCg -3'
miRNA:   3'- -UGCCuGCCGgCCGGGauGCGgGUCCG- -5'
14294 5' -64.6 NC_003521.1 + 236254 0.66 0.677439
Target:  5'- cCGGA-GGCCGGCgUgu-GCCCcGGCc -3'
miRNA:   3'- uGCCUgCCGGCCGgGaugCGGGuCCG- -5'
14294 5' -64.6 NC_003521.1 + 180797 0.66 0.677439
Target:  5'- gACGGGgaaggugaGGCCGGUgCUgucGCGCUgcugCAGGCu -3'
miRNA:   3'- -UGCCUg-------CCGGCCGgGA---UGCGG----GUCCG- -5'
14294 5' -64.6 NC_003521.1 + 111113 0.66 0.677439
Target:  5'- gACGGgccGCGGCCGGCagaagcggGCGUCCucGCc -3'
miRNA:   3'- -UGCC---UGCCGGCCGgga-----UGCGGGucCG- -5'
14294 5' -64.6 NC_003521.1 + 197379 0.66 0.677439
Target:  5'- uUGGAgaGGCUcuGGCUCgcCGCCCGGGa -3'
miRNA:   3'- uGCCUg-CCGG--CCGGGauGCGGGUCCg -5'
14294 5' -64.6 NC_003521.1 + 197325 0.66 0.677439
Target:  5'- cUGGuCGGCCaGGCCCUGgG-CgAGGUc -3'
miRNA:   3'- uGCCuGCCGG-CCGGGAUgCgGgUCCG- -5'
14294 5' -64.6 NC_003521.1 + 127785 0.66 0.676511
Target:  5'- gGCGG-CGGCCGuaGCCgcACGUgcuccaugaucugCCAGGCg -3'
miRNA:   3'- -UGCCuGCCGGC--CGGgaUGCG-------------GGUCCG- -5'
14294 5' -64.6 NC_003521.1 + 176448 0.66 0.674654
Target:  5'- uGCaGACGcGCCcGCaCCUcgggcauguccaggGCGCCCAGGg -3'
miRNA:   3'- -UGcCUGC-CGGcCG-GGA--------------UGCGGGUCCg -5'
14294 5' -64.6 NC_003521.1 + 82847 0.66 0.671867
Target:  5'- cGCGGGCGGCgGcGUCgCUaccaGCGCCgucgucgcccagccuCAGGCc -3'
miRNA:   3'- -UGCCUGCCGgC-CGG-GA----UGCGG---------------GUCCG- -5'
14294 5' -64.6 NC_003521.1 + 31495 0.66 0.668147
Target:  5'- cGCGGguuGGCacaGGCCCa--GCCCguGGGCa -3'
miRNA:   3'- -UGCCug-CCGg--CCGGGaugCGGG--UCCG- -5'
14294 5' -64.6 NC_003521.1 + 61559 0.66 0.668147
Target:  5'- aACGGAgguaacgcugcUGGCCGGCgaguucagGCGCCagaAGGCc -3'
miRNA:   3'- -UGCCU-----------GCCGGCCGgga-----UGCGGg--UCCG- -5'
14294 5' -64.6 NC_003521.1 + 111034 0.66 0.668147
Target:  5'- cGCGGuCGGCCucGGCgCgcacgUGCGCgggaCAGGCg -3'
miRNA:   3'- -UGCCuGCCGG--CCGgG-----AUGCGg---GUCCG- -5'
14294 5' -64.6 NC_003521.1 + 13215 0.66 0.668147
Target:  5'- uUGGAgGGCCGaCCg-GCGCCCAaGCc -3'
miRNA:   3'- uGCCUgCCGGCcGGgaUGCGGGUcCG- -5'
14294 5' -64.6 NC_003521.1 + 207899 0.66 0.668147
Target:  5'- uUGGGCucuccGGCCGccaCCUACGCCgGGGg -3'
miRNA:   3'- uGCCUG-----CCGGCcg-GGAUGCGGgUCCg -5'
14294 5' -64.6 NC_003521.1 + 148146 0.66 0.668147
Target:  5'- -gGGAC--CCGGCaCCU-CGCCgAGGCu -3'
miRNA:   3'- ugCCUGccGGCCG-GGAuGCGGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.