miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14295 3' -65.6 NC_003521.1 + 110627 0.66 0.637706
Target:  5'- --aCCGCGGGcaucgGCAUCUcGCCGgGCGCc -3'
miRNA:   3'- cugGGCGCCC-----UGUGGGuCGGC-CGCGc -5'
14295 3' -65.6 NC_003521.1 + 90311 0.66 0.637706
Target:  5'- -uCCCGCuccuagcaGGGC-CCC-GCCGGCGCc -3'
miRNA:   3'- cuGGGCGc-------CCUGuGGGuCGGCCGCGc -5'
14295 3' -65.6 NC_003521.1 + 186295 0.66 0.637706
Target:  5'- --gCCGCcGGGC-CCCAGC-GGCGCc -3'
miRNA:   3'- cugGGCGcCCUGuGGGUCGgCCGCGc -5'
14295 3' -65.6 NC_003521.1 + 123338 0.66 0.637706
Target:  5'- -cCCCGCcGGACagGCCCGucGCCgGGUGUGg -3'
miRNA:   3'- cuGGGCGcCCUG--UGGGU--CGG-CCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 19114 0.66 0.637706
Target:  5'- aGACgaCGCGGGugGCgggCC-GCCGGUGUa -3'
miRNA:   3'- -CUGg-GCGCCCugUG---GGuCGGCCGCGc -5'
14295 3' -65.6 NC_003521.1 + 14353 0.66 0.637706
Target:  5'- cGACCaguaccuggUGCuGGugGCCCacaaccuggacgAGCUGGCGCGc -3'
miRNA:   3'- -CUGG---------GCGcCCugUGGG------------UCGGCCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 172306 0.66 0.637706
Target:  5'- -gUCCGguguCGGuGGCGCCaGGCCGGuCGCGg -3'
miRNA:   3'- cuGGGC----GCC-CUGUGGgUCGGCC-GCGC- -5'
14295 3' -65.6 NC_003521.1 + 217607 0.66 0.637706
Target:  5'- gGACCaGCaGGGGCGuCUCGGCCgccaucuccucGGCGUGg -3'
miRNA:   3'- -CUGGgCG-CCCUGU-GGGUCGG-----------CCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 25394 0.66 0.632129
Target:  5'- cACCCGCGgcucugcuucacggaGGGCucGCCCAGCCucaccuuccuGGUGCc -3'
miRNA:   3'- cUGGGCGC---------------CCUG--UGGGUCGG----------CCGCGc -5'
14295 3' -65.6 NC_003521.1 + 18686 0.66 0.628411
Target:  5'- -gUCUG-GGGuuuCGCCaUGGCCGGCGCGa -3'
miRNA:   3'- cuGGGCgCCCu--GUGG-GUCGGCCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 229055 0.66 0.62841
Target:  5'- -cCCCaCGaGGACgaaggcagucACCCAGgCGGCGUGg -3'
miRNA:   3'- cuGGGcGC-CCUG----------UGGGUCgGCCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 130842 0.66 0.62841
Target:  5'- gGACCgGCaGGcCGCCCuacuGCaGGCGCa -3'
miRNA:   3'- -CUGGgCGcCCuGUGGGu---CGgCCGCGc -5'
14295 3' -65.6 NC_003521.1 + 101438 0.66 0.62841
Target:  5'- cGACcaCCGCGGGGC-CaagAGCaCGGCGCu -3'
miRNA:   3'- -CUG--GGCGCCCUGuGgg-UCG-GCCGCGc -5'
14295 3' -65.6 NC_003521.1 + 89736 0.66 0.62841
Target:  5'- gGGCaCG-GGGGCGgUgacggCAGCCGGCGCGg -3'
miRNA:   3'- -CUGgGCgCCCUGUgG-----GUCGGCCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 115335 0.66 0.62841
Target:  5'- gGGCCUGauGGAgACCaagaugaaGGgCGGCGCGg -3'
miRNA:   3'- -CUGGGCgcCCUgUGGg-------UCgGCCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 85167 0.66 0.62841
Target:  5'- aGACCUcCGccGcCACCCAGCaCGGCGCu -3'
miRNA:   3'- -CUGGGcGCc-CuGUGGGUCG-GCCGCGc -5'
14295 3' -65.6 NC_003521.1 + 74540 0.66 0.62841
Target:  5'- aGGCCaCGCGGacCAgCCGcGCCGuGCGCGu -3'
miRNA:   3'- -CUGG-GCGCCcuGUgGGU-CGGC-CGCGC- -5'
14295 3' -65.6 NC_003521.1 + 82746 0.66 0.624692
Target:  5'- cGCuuGCGGGACGagaucacgcgcgaCCGGCgGGcCGUGg -3'
miRNA:   3'- cUGggCGCCCUGUg------------GGUCGgCC-GCGC- -5'
14295 3' -65.6 NC_003521.1 + 61727 0.66 0.619117
Target:  5'- --gCCGCGGGACugguaCAGgaGGCGCGc -3'
miRNA:   3'- cugGGCGCCCUGugg--GUCggCCGCGC- -5'
14295 3' -65.6 NC_003521.1 + 185626 0.66 0.619117
Target:  5'- aGCCgGC-GGACugCCAucGCCGGuCGUGu -3'
miRNA:   3'- cUGGgCGcCCUGugGGU--CGGCC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.