miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14295 5' -56.3 NC_003521.1 + 163463 0.66 0.950896
Target:  5'- gAGCGCAUGacugaGGaUGAugAgaCCGGGGGCg -3'
miRNA:   3'- -UUGCGUAUg----CC-GCUugUg-GGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 105410 0.66 0.950896
Target:  5'- cGCGCGUgACGGCGAugGggauGGGGCa -3'
miRNA:   3'- uUGCGUA-UGCCGCUugUggguCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 37378 0.66 0.950896
Target:  5'- cGACuGCGguguucgagGCGGCGGggGCGCCCGGGccuugugcGACg -3'
miRNA:   3'- -UUG-CGUa--------UGCCGCU--UGUGGGUCC--------CUG- -5'
14295 5' -56.3 NC_003521.1 + 149404 0.66 0.950896
Target:  5'- aGGCGCAUGCGcaCGGuCGCCCuGuGGGCc -3'
miRNA:   3'- -UUGCGUAUGCc-GCUuGUGGGuC-CCUG- -5'
14295 5' -56.3 NC_003521.1 + 112056 0.66 0.950896
Target:  5'- cGACGCcUGCuGGaGGACGCCgcgguggggauCAGGGGCg -3'
miRNA:   3'- -UUGCGuAUG-CCgCUUGUGG-----------GUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 120344 0.66 0.950896
Target:  5'- cGCGCcucuCGGCGGagACACCUGcGGACg -3'
miRNA:   3'- uUGCGuau-GCCGCU--UGUGGGUcCCUG- -5'
14295 5' -56.3 NC_003521.1 + 74106 0.66 0.950896
Target:  5'- uGCGCG-ACuGCGcGACGCCCAuGGGCg -3'
miRNA:   3'- uUGCGUaUGcCGC-UUGUGGGUcCCUG- -5'
14295 5' -56.3 NC_003521.1 + 146518 0.66 0.950492
Target:  5'- -cCGCAgaaACGGCGGcucCACCCGGGucccuccGGCg -3'
miRNA:   3'- uuGCGUa--UGCCGCUu--GUGGGUCC-------CUG- -5'
14295 5' -56.3 NC_003521.1 + 14394 0.66 0.946754
Target:  5'- uGGCGCGcUACGGCGugucGCGCUCGGaGAUc -3'
miRNA:   3'- -UUGCGU-AUGCCGCu---UGUGGGUCcCUG- -5'
14295 5' -56.3 NC_003521.1 + 122748 0.66 0.946754
Target:  5'- -cCGCcgAUGGCuGACACCgggcaCGGGGAUg -3'
miRNA:   3'- uuGCGuaUGCCGcUUGUGG-----GUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 87759 0.66 0.946754
Target:  5'- gGGCcCcgGCGGCGGAggagGCCUGGGGGCc -3'
miRNA:   3'- -UUGcGuaUGCCGCUUg---UGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 135754 0.66 0.946754
Target:  5'- gGugGCG-GCGGUGGgauCGCCCcuGGGGCu -3'
miRNA:   3'- -UugCGUaUGCCGCUu--GUGGGu-CCCUG- -5'
14295 5' -56.3 NC_003521.1 + 62222 0.66 0.946754
Target:  5'- gGACGcCGUGCuGCaggaGGGCGCCCGGcuGGACg -3'
miRNA:   3'- -UUGC-GUAUGcCG----CUUGUGGGUC--CCUG- -5'
14295 5' -56.3 NC_003521.1 + 150705 0.66 0.946754
Target:  5'- uGCGCcgGCGGCGAcugGCucucgGCCguGGGcCa -3'
miRNA:   3'- uUGCGuaUGCCGCU---UG-----UGGguCCCuG- -5'
14295 5' -56.3 NC_003521.1 + 150097 0.66 0.942387
Target:  5'- --aGCuAUGCGggaacagaGCGggUACCUAGGGAUc -3'
miRNA:   3'- uugCG-UAUGC--------CGCuuGUGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 115949 0.66 0.942387
Target:  5'- gGGCGUcuugcggcucaGUACGGCGuuguccgaGACGCCCAGGu-- -3'
miRNA:   3'- -UUGCG-----------UAUGCCGC--------UUGUGGGUCCcug -5'
14295 5' -56.3 NC_003521.1 + 197460 0.66 0.937795
Target:  5'- cAGCGCAUGCucuGGCGGauguucACGCgCGGcGGGCc -3'
miRNA:   3'- -UUGCGUAUG---CCGCU------UGUGgGUC-CCUG- -5'
14295 5' -56.3 NC_003521.1 + 70359 0.66 0.937795
Target:  5'- cGCGCuaguCGGCGAcaugacugggGCGCgaGGGGACa -3'
miRNA:   3'- uUGCGuau-GCCGCU----------UGUGggUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 174061 0.66 0.937795
Target:  5'- --gGCcgGCGGCau-CACCCGcGGGAUg -3'
miRNA:   3'- uugCGuaUGCCGcuuGUGGGU-CCCUG- -5'
14295 5' -56.3 NC_003521.1 + 178792 0.66 0.937795
Target:  5'- -cCGCGggACgGGCGAggcAUGCCCGGcGGGCg -3'
miRNA:   3'- uuGCGUa-UG-CCGCU---UGUGGGUC-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.