miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14295 5' -56.3 NC_003521.1 + 202219 1.07 0.004854
Target:  5'- uAACGCAUACGGCGAACACCCAGGGACa -3'
miRNA:   3'- -UUGCGUAUGCCGCUUGUGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 1992 0.95 0.031374
Target:  5'- uAACG-AUACGGCGAACACCCAGGGACa -3'
miRNA:   3'- -UUGCgUAUGCCGCUUGUGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 43118 0.78 0.345562
Target:  5'- aAGCGC-UGCGGCGAGCGCUCGGcgcuGGGCg -3'
miRNA:   3'- -UUGCGuAUGCCGCUUGUGGGUC----CCUG- -5'
14295 5' -56.3 NC_003521.1 + 120546 0.75 0.508095
Target:  5'- cGGCgGCcgGCGGUcccggggGAGCGCCCGGGGAUa -3'
miRNA:   3'- -UUG-CGuaUGCCG-------CUUGUGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 16100 0.74 0.547651
Target:  5'- -cUGCGU-CGGCGAGCACCaCGggcGGGACg -3'
miRNA:   3'- uuGCGUAuGCCGCUUGUGG-GU---CCCUG- -5'
14295 5' -56.3 NC_003521.1 + 102663 0.74 0.577198
Target:  5'- aGGCGCGaggagACGGCGAagccgccgggcaGCACCCAGuGGAa -3'
miRNA:   3'- -UUGCGUa----UGCCGCU------------UGUGGGUC-CCUg -5'
14295 5' -56.3 NC_003521.1 + 185748 0.73 0.597094
Target:  5'- gAGCGgGUGCGcCgGAGCGCCUAGGGGCc -3'
miRNA:   3'- -UUGCgUAUGCcG-CUUGUGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 102371 0.73 0.597094
Target:  5'- uGGCGCcgcCGGCGAugcACGCgCGGGGACg -3'
miRNA:   3'- -UUGCGuauGCCGCU---UGUGgGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 91309 0.73 0.607082
Target:  5'- cGCGCGUAUGcGUGuGCGCgCGGGGGCa -3'
miRNA:   3'- uUGCGUAUGC-CGCuUGUGgGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 239663 0.73 0.647143
Target:  5'- -cCGUAgGCGGCGccguGGCuCCCGGGGACg -3'
miRNA:   3'- uuGCGUaUGCCGC----UUGuGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 105048 0.73 0.647143
Target:  5'- -cCGCccGUGC-GCGAGCAgcCCCAGGGGCg -3'
miRNA:   3'- uuGCG--UAUGcCGCUUGU--GGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 39436 0.73 0.647143
Target:  5'- -cCGUAgGCGGCGccguGGCuCCCGGGGACg -3'
miRNA:   3'- uuGCGUaUGCCGC----UUGuGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 103118 0.72 0.687018
Target:  5'- gGACGCGgggugagGCuGGUGGGgagaGCCCAGGGGCa -3'
miRNA:   3'- -UUGCGUa------UG-CCGCUUg---UGGGUCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 113380 0.71 0.716494
Target:  5'- gGAgGguUACGGCGGACGCCgCGGGcGGg -3'
miRNA:   3'- -UUgCguAUGCCGCUUGUGG-GUCC-CUg -5'
14295 5' -56.3 NC_003521.1 + 139451 0.71 0.716494
Target:  5'- cGGCGCG-ACGGCucgcGCACCC-GGGACu -3'
miRNA:   3'- -UUGCGUaUGCCGcu--UGUGGGuCCCUG- -5'
14295 5' -56.3 NC_003521.1 + 166217 0.71 0.726193
Target:  5'- uGGCGCG-GCGGCGAggcGCGCCgGccgcGGGACg -3'
miRNA:   3'- -UUGCGUaUGCCGCU---UGUGGgU----CCCUG- -5'
14295 5' -56.3 NC_003521.1 + 236485 0.71 0.726193
Target:  5'- -cCGCcgGCGGCGGugGCgCCAGgcauGGACg -3'
miRNA:   3'- uuGCGuaUGCCGCUugUG-GGUC----CCUG- -5'
14295 5' -56.3 NC_003521.1 + 238452 0.71 0.732936
Target:  5'- aGGCGCAgggcggccuCGGCGGGCggggcggagacgcgGCCCAGGGuCa -3'
miRNA:   3'- -UUGCGUau-------GCCGCUUG--------------UGGGUCCCuG- -5'
14295 5' -56.3 NC_003521.1 + 38224 0.71 0.732936
Target:  5'- aGGCGCAgggcggccuCGGCGGGCggggcggagacgcgGCCCAGGGuCa -3'
miRNA:   3'- -UUGCGUau-------GCCGCUUG--------------UGGGUCCCuG- -5'
14295 5' -56.3 NC_003521.1 + 41942 0.71 0.735814
Target:  5'- cACGCG-GCuGCGAcaguGCAUCCGGGGGCa -3'
miRNA:   3'- uUGCGUaUGcCGCU----UGUGGGUCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.