miRNA display CGI


Results 1 - 20 of 192 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14298 3' -57.5 NC_003521.1 + 179031 0.66 0.93307
Target:  5'- --aCGUCuuuUCCGC-AUCCACGCCGGa -3'
miRNA:   3'- uuaGCGGc--AGGCGcUAGGUGUGGCUg -5'
14298 3' -57.5 NC_003521.1 + 104182 0.66 0.93307
Target:  5'- uGUCGCCG-CCGCc--CCGCGCCcguGGCc -3'
miRNA:   3'- uUAGCGGCaGGCGcuaGGUGUGG---CUG- -5'
14298 3' -57.5 NC_003521.1 + 40539 0.66 0.93307
Target:  5'- --aCGCCG-CCGCGGaaaccgguUCCGugacuCACCGAUc -3'
miRNA:   3'- uuaGCGGCaGGCGCU--------AGGU-----GUGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 240766 0.66 0.93307
Target:  5'- --aCGCCG-CCGCGGaaaccgguUCCGugacuCACCGAUc -3'
miRNA:   3'- uuaGCGGCaGGCGCU--------AGGU-----GUGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 217 0.66 0.93307
Target:  5'- --aCGCCG-CCGCGGaaaccgguUCCGugacuCACCGAUc -3'
miRNA:   3'- uuaGCGGCaGGCGCU--------AGGU-----GUGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 143009 0.66 0.93307
Target:  5'- --gCGCCGUCCGCGucaagaaUCACGuCgCGGCu -3'
miRNA:   3'- uuaGCGGCAGGCGCua-----GGUGU-G-GCUG- -5'
14298 3' -57.5 NC_003521.1 + 191744 0.66 0.93307
Target:  5'- uAUCGCCccccGUCCGaCGGUCCAC-CgGGu -3'
miRNA:   3'- uUAGCGG----CAGGC-GCUAGGUGuGgCUg -5'
14298 3' -57.5 NC_003521.1 + 181749 0.66 0.93307
Target:  5'- ---gGCCG--CGCGAUCCG-GCCGACg -3'
miRNA:   3'- uuagCGGCagGCGCUAGGUgUGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 100242 0.66 0.93307
Target:  5'- -cUCGCCGgCCGCGAaaUCCucgGgCGGCg -3'
miRNA:   3'- uuAGCGGCaGGCGCU--AGGug-UgGCUG- -5'
14298 3' -57.5 NC_003521.1 + 181314 0.66 0.93307
Target:  5'- ---gGCCGcCCGCGggCCaggGCGCCGuCu -3'
miRNA:   3'- uuagCGGCaGGCGCuaGG---UGUGGCuG- -5'
14298 3' -57.5 NC_003521.1 + 183647 0.66 0.93307
Target:  5'- --gCGCCGcuucgugCUGCGG--CACGCCGACg -3'
miRNA:   3'- uuaGCGGCa------GGCGCUagGUGUGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 110823 0.66 0.93307
Target:  5'- ---gGCCGU-UGCGcgCCGCcGCCGGCg -3'
miRNA:   3'- uuagCGGCAgGCGCuaGGUG-UGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 98160 0.66 0.93307
Target:  5'- cGUCGCUG-CUGaCGGcgCUGCGCCGACc -3'
miRNA:   3'- uUAGCGGCaGGC-GCUa-GGUGUGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 123311 0.66 0.932584
Target:  5'- -cUCGgCGUCCaguuccaGCcGUCCgaACACCGACg -3'
miRNA:   3'- uuAGCgGCAGG-------CGcUAGG--UGUGGCUG- -5'
14298 3' -57.5 NC_003521.1 + 153183 0.66 0.932584
Target:  5'- --aCGCUGUCCucgaugccgaugcGCGAUuuGCuguCCGACa -3'
miRNA:   3'- uuaGCGGCAGG-------------CGCUAggUGu--GGCUG- -5'
14298 3' -57.5 NC_003521.1 + 86685 0.66 0.928112
Target:  5'- cGUCGUCGUaucUgGCGggCCGCGgCGGCg -3'
miRNA:   3'- uUAGCGGCA---GgCGCuaGGUGUgGCUG- -5'
14298 3' -57.5 NC_003521.1 + 109761 0.66 0.928112
Target:  5'- cGGUCGCCGccaCCGCG-UCCGaggccCGCCGcCg -3'
miRNA:   3'- -UUAGCGGCa--GGCGCuAGGU-----GUGGCuG- -5'
14298 3' -57.5 NC_003521.1 + 136657 0.66 0.928112
Target:  5'- --aCGCCGU--GCGAcCCGCGCCGcCg -3'
miRNA:   3'- uuaGCGGCAggCGCUaGGUGUGGCuG- -5'
14298 3' -57.5 NC_003521.1 + 166021 0.66 0.928112
Target:  5'- --cCGuCCGUCCGCGucucgCCGCuACCG-Cu -3'
miRNA:   3'- uuaGC-GGCAGGCGCua---GGUG-UGGCuG- -5'
14298 3' -57.5 NC_003521.1 + 100745 0.66 0.928112
Target:  5'- uGUCGUCGUCCGgGG-CUuCGCCGuCg -3'
miRNA:   3'- uUAGCGGCAGGCgCUaGGuGUGGCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.