miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14298 5' -57.8 NC_003521.1 + 101813 0.66 0.913958
Target:  5'- uGGGCC-UUCUCGUcuucgcagaagaaggUgGCGGGCUCCGGg -3'
miRNA:   3'- -UUCGGcAAGGGCA---------------A-CGCCUGAGGCUa -5'
14298 5' -57.8 NC_003521.1 + 37813 0.66 0.91166
Target:  5'- -cGCCGaaCCCGUcuugGCGGGCgagCCGc- -3'
miRNA:   3'- uuCGGCaaGGGCAa---CGCCUGa--GGCua -5'
14298 5' -57.8 NC_003521.1 + 47885 0.66 0.91166
Target:  5'- uGGCCcagugUCCCaggGCGGGCUCUGGg -3'
miRNA:   3'- uUCGGca---AGGGcaaCGCCUGAGGCUa -5'
14298 5' -57.8 NC_003521.1 + 228901 0.66 0.893297
Target:  5'- cAGCCGggCCCGgcugGgGGACU-CGAUc -3'
miRNA:   3'- uUCGGCaaGGGCaa--CgCCUGAgGCUA- -5'
14298 5' -57.8 NC_003521.1 + 239649 0.66 0.892652
Target:  5'- cAGGCCGUccagUCCCGUagGCGGcgccgugGCUcCCGGg -3'
miRNA:   3'- -UUCGGCA----AGGGCAa-CGCC-------UGA-GGCUa -5'
14298 5' -57.8 NC_003521.1 + 39422 0.66 0.892651
Target:  5'- cAGGCCGUccagUCCCGUagGCGGcgccgugGCUcCCGGg -3'
miRNA:   3'- -UUCGGCA----AGGGCAa-CGCC-------UGA-GGCUa -5'
14298 5' -57.8 NC_003521.1 + 33969 0.67 0.865819
Target:  5'- gGAGCggaGUUCCCGacgUUGCGG-CUCCuGAg -3'
miRNA:   3'- -UUCGg--CAAGGGC---AACGCCuGAGG-CUa -5'
14298 5' -57.8 NC_003521.1 + 149048 0.68 0.793023
Target:  5'- gAGGCCGUgCCCGc-GCuGGGCUUCGAc -3'
miRNA:   3'- -UUCGGCAaGGGCaaCG-CCUGAGGCUa -5'
14298 5' -57.8 NC_003521.1 + 36803 0.68 0.793022
Target:  5'- gGAGCCGcUCgCGgacgGCGGACUCgGGc -3'
miRNA:   3'- -UUCGGCaAGgGCaa--CGCCUGAGgCUa -5'
14298 5' -57.8 NC_003521.1 + 108209 0.69 0.78415
Target:  5'- -cGCCGagUCuggaagCCGUUGCGGACgCCGAc -3'
miRNA:   3'- uuCGGCa-AG------GGCAACGCCUGaGGCUa -5'
14298 5' -57.8 NC_003521.1 + 5553 0.71 0.660137
Target:  5'- -cGUCGUUCCUcccgGUUGCGGGCUCggCGGUg -3'
miRNA:   3'- uuCGGCAAGGG----CAACGCCUGAG--GCUA- -5'
14298 5' -57.8 NC_003521.1 + 592 1.03 0.007271
Target:  5'- gAAGCCGUUCCCGUUGCGGACUCCGAUc -3'
miRNA:   3'- -UUCGGCAAGGGCAACGCCUGAGGCUA- -5'
14298 5' -57.8 NC_003521.1 + 200819 1.03 0.007271
Target:  5'- gAAGCCGUUCCCGUUGCGGACUCCGAUc -3'
miRNA:   3'- -UUCGGCAAGGGCAACGCCUGAGGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.