miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 5' -55.7 NC_003521.1 + 205319 0.66 0.960898
Target:  5'- cCGUC--GGGCUCUGggaauaaCAGCGUgGAGUc -3'
miRNA:   3'- -GCAGugUCCGAGACg------GUCGCAaCUCA- -5'
14299 5' -55.7 NC_003521.1 + 179893 0.66 0.960898
Target:  5'- gGUCAUGGGCgaacccUUGCCGuaGUUGGGg -3'
miRNA:   3'- gCAGUGUCCGa-----GACGGUcgCAACUCa -5'
14299 5' -55.7 NC_003521.1 + 39324 0.66 0.957334
Target:  5'- gCGUCGCGGGCggcuaggGUCAGCGUg---- -3'
miRNA:   3'- -GCAGUGUCCGaga----CGGUCGCAacuca -5'
14299 5' -55.7 NC_003521.1 + 43853 0.66 0.957334
Target:  5'- cCGUCACAGGCgccccgGCCGGCucccGGGc -3'
miRNA:   3'- -GCAGUGUCCGaga---CGGUCGcaa-CUCa -5'
14299 5' -55.7 NC_003521.1 + 239551 0.66 0.957334
Target:  5'- gCGUCGCGGGCggCUaggGUCAGCGUg---- -3'
miRNA:   3'- -GCAGUGUCCGa-GA---CGGUCGCAacuca -5'
14299 5' -55.7 NC_003521.1 + 122576 0.66 0.948728
Target:  5'- gCGUCACgGGGCUCgguuucucggucGCCGGCGUUu--- -3'
miRNA:   3'- -GCAGUG-UCCGAGa-----------CGGUCGCAAcuca -5'
14299 5' -55.7 NC_003521.1 + 163215 0.67 0.940885
Target:  5'- cCGUCACGGGCgcgcCCGGUGacgUGGGUu -3'
miRNA:   3'- -GCAGUGUCCGagacGGUCGCa--ACUCA- -5'
14299 5' -55.7 NC_003521.1 + 192021 0.67 0.936211
Target:  5'- uCGUCGuCAGGUUCUgcaccGCCGGCGUg---- -3'
miRNA:   3'- -GCAGU-GUCCGAGA-----CGGUCGCAacuca -5'
14299 5' -55.7 NC_003521.1 + 165491 0.67 0.926174
Target:  5'- uCGUCGCGGGCcgCcGUCAGCaucUGGGUg -3'
miRNA:   3'- -GCAGUGUCCGa-GaCGGUCGca-ACUCA- -5'
14299 5' -55.7 NC_003521.1 + 220989 0.68 0.903963
Target:  5'- aCGUCGCGGGCgaacguguaggugGCCAGCGUcagGAa- -3'
miRNA:   3'- -GCAGUGUCCGaga----------CGGUCGCAa--CUca -5'
14299 5' -55.7 NC_003521.1 + 33009 0.69 0.869804
Target:  5'- --cCGCAGGCUCUcgGCCAGC-UUGAc- -3'
miRNA:   3'- gcaGUGUCCGAGA--CGGUCGcAACUca -5'
14299 5' -55.7 NC_003521.1 + 22409 0.7 0.814431
Target:  5'- uGUCGCuGGCcaugCUGCgCGGCGUggccGAGUa -3'
miRNA:   3'- gCAGUGuCCGa---GACG-GUCGCAa---CUCA- -5'
14299 5' -55.7 NC_003521.1 + 195958 0.71 0.769976
Target:  5'- gGcCACAGGCUCUGgCAGCgGUUGu-- -3'
miRNA:   3'- gCaGUGUCCGAGACgGUCG-CAACuca -5'
14299 5' -55.7 NC_003521.1 + 40796 1.07 0.006258
Target:  5'- gCGUCACAGGCUCUGCCAGCGUUGAGUc -3'
miRNA:   3'- -GCAGUGUCCGAGACGGUCGCAACUCA- -5'
14299 5' -55.7 NC_003521.1 + 474 1.07 0.006258
Target:  5'- gCGUCACAGGCUCUGCCAGCGUUGAGUc -3'
miRNA:   3'- -GCAGUGUCCGAGACGGUCGCAACUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.