miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
143 3' -56.3 AC_000006.1 + 5954 0.66 0.500453
Target:  5'- uGAGUGcCGAGGUCAUGCc-CGCUcucgaGAGGg -3'
miRNA:   3'- -CUCAU-GCUCCGGUACGacGCGG-----CUUC- -5'
143 3' -56.3 AC_000006.1 + 6704 0.67 0.438003
Target:  5'- cGAGUugGAGGagAUGgUGgGCCGuuGg -3'
miRNA:   3'- -CUCAugCUCCggUACgACgCGGCuuC- -5'
143 3' -56.3 AC_000006.1 + 35038 0.67 0.438003
Target:  5'- uAGgGCGGGGCUAcUGCUGauugGCCGAGa -3'
miRNA:   3'- cUCaUGCUCCGGU-ACGACg---CGGCUUc -5'
143 3' -56.3 AC_000006.1 + 63 0.67 0.438003
Target:  5'- uAGgGCGGGGCUAcUGCUGauugGCCGAGa -3'
miRNA:   3'- cUCaUGCUCCGGU-ACGACg---CGGCUUc -5'
143 3' -56.3 AC_000006.1 + 19662 0.67 0.428031
Target:  5'- aGGGUG-GAGGCgGUGUugUGCGCCauGggGa -3'
miRNA:   3'- -CUCAUgCUCCGgUACG--ACGCGG--CuuC- -5'
143 3' -56.3 AC_000006.1 + 8391 0.68 0.398939
Target:  5'- ---cGCGGGGCCGgaaccgccGCUGCcGCCGGGa -3'
miRNA:   3'- cucaUGCUCCGGUa-------CGACG-CGGCUUc -5'
143 3' -56.3 AC_000006.1 + 10893 0.68 0.386732
Target:  5'- gGAGcUGCGcgaGGGCCuggaccgccagcgcGUGCUGCGCgaCGAGGa -3'
miRNA:   3'- -CUC-AUGC---UCCGG--------------UACGACGCG--GCUUC- -5'
143 3' -56.3 AC_000006.1 + 16809 0.69 0.336191
Target:  5'- cGGcgGCG-GGCCAUGCgcagGCGCCuGAGu -3'
miRNA:   3'- cUCa-UGCuCCGGUACGa---CGCGGcUUC- -5'
143 3' -56.3 AC_000006.1 + 16102 0.69 0.311592
Target:  5'- aGGUGCugccccAGGCgGUGCUGCuGCCGAGc -3'
miRNA:   3'- cUCAUGc-----UCCGgUACGACG-CGGCUUc -5'
143 3' -56.3 AC_000006.1 + 5455 0.7 0.295966
Target:  5'- cGAGUGCGAGaCCGU-CUGCGCCc--- -3'
miRNA:   3'- -CUCAUGCUCcGGUAcGACGCGGcuuc -5'
143 3' -56.3 AC_000006.1 + 6635 0.7 0.288384
Target:  5'- aAGgcCGGGGCCGaaauUGgUGCGCUGggGc -3'
miRNA:   3'- cUCauGCUCCGGU----ACgACGCGGCuuC- -5'
143 3' -56.3 AC_000006.1 + 4084 0.71 0.25276
Target:  5'- aGAGcACGAGGCCAUGCagugGUGCUa--- -3'
miRNA:   3'- -CUCaUGCUCCGGUACGa---CGCGGcuuc -5'
143 3' -56.3 AC_000006.1 + 14177 0.71 0.23571
Target:  5'- --cUACGAGGCCuuucacccggacgugGUGCUGCuGCCGGGc -3'
miRNA:   3'- cucAUGCUCCGG---------------UACGACG-CGGCUUc -5'
143 3' -56.3 AC_000006.1 + 20860 1.08 0.000461
Target:  5'- cGAGUACGAGGCCAUGCUGCGCCGAAGc -3'
miRNA:   3'- -CUCAUGCUCCGGUACGACGCGGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.