miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1430 5' -54.6 NC_001335.1 + 31737 0.66 0.743647
Target:  5'- -cGACCAUCGGUGAgUUCGUc-AUGUUc -3'
miRNA:   3'- caCUGGUAGCCGCU-GAGCGacUACAG- -5'
1430 5' -54.6 NC_001335.1 + 3321 0.66 0.743647
Target:  5'- -aGACCggCGGCGAacacaacgCGCUGcaucaggucuAUGUCa -3'
miRNA:   3'- caCUGGuaGCCGCUga------GCGAC----------UACAG- -5'
1430 5' -54.6 NC_001335.1 + 8952 0.66 0.733011
Target:  5'- -aGACCAUCGGCuGGuuccgCGCUGAcgGUg -3'
miRNA:   3'- caCUGGUAGCCG-CUga---GCGACUa-CAg -5'
1430 5' -54.6 NC_001335.1 + 17367 0.66 0.696146
Target:  5'- gGUGucuCCAUCGGCGGCgcgcucaucggcgCGCUGgcGa- -3'
miRNA:   3'- -CACu--GGUAGCCGCUGa------------GCGACuaCag -5'
1430 5' -54.6 NC_001335.1 + 2087 0.67 0.675194
Target:  5'- -aGAUCGggcUCGGCGGCUgCGUgaacacgaccuucuUGAUGUCc -3'
miRNA:   3'- caCUGGU---AGCCGCUGA-GCG--------------ACUACAG- -5'
1430 5' -54.6 NC_001335.1 + 22756 0.67 0.675194
Target:  5'- gGUGGCCGUCGGCacgguaguacccucGGC-CGCUGGa--- -3'
miRNA:   3'- -CACUGGUAGCCG--------------CUGaGCGACUacag -5'
1430 5' -54.6 NC_001335.1 + 12012 0.67 0.667433
Target:  5'- --cGCCGUUGaggauCGGCUCGgUGAUGUCg -3'
miRNA:   3'- cacUGGUAGCc----GCUGAGCgACUACAG- -5'
1430 5' -54.6 NC_001335.1 + 41728 0.67 0.634029
Target:  5'- -gGugUGUCGGUc-CUCGCUGGUGUg -3'
miRNA:   3'- caCugGUAGCCGcuGAGCGACUACAg -5'
1430 5' -54.6 NC_001335.1 + 34280 0.67 0.634029
Target:  5'- uGUGGCCggCGGUGuGCgccggucggCGCgGAUGUCg -3'
miRNA:   3'- -CACUGGuaGCCGC-UGa--------GCGaCUACAG- -5'
1430 5' -54.6 NC_001335.1 + 3645 0.68 0.622876
Target:  5'- uUGACCAacugcUCGGUgagcGGCUUGCUGgcGUUg -3'
miRNA:   3'- cACUGGU-----AGCCG----CUGAGCGACuaCAG- -5'
1430 5' -54.6 NC_001335.1 + 46289 0.69 0.567431
Target:  5'- cUGACCGUgGGCauaGC-CGCUGAgGUCg -3'
miRNA:   3'- cACUGGUAgCCGc--UGaGCGACUaCAG- -5'
1430 5' -54.6 NC_001335.1 + 5988 0.7 0.471596
Target:  5'- uUGGCCGUCGGUcgaaaaggGugUCGCUGAg--- -3'
miRNA:   3'- cACUGGUAGCCG--------CugAGCGACUacag -5'
1430 5' -54.6 NC_001335.1 + 26616 0.71 0.412453
Target:  5'- -cGGCCGUCGGCGAUguagUUGCgGAcgGUCu -3'
miRNA:   3'- caCUGGUAGCCGCUG----AGCGaCUa-CAG- -5'
1430 5' -54.6 NC_001335.1 + 3697 0.72 0.393779
Target:  5'- gGUGACCucgCGGCG-CUCGUUcgaugaggucGGUGUCg -3'
miRNA:   3'- -CACUGGua-GCCGCuGAGCGA----------CUACAG- -5'
1430 5' -54.6 NC_001335.1 + 1774 1.1 0.000809
Target:  5'- cGUGACCAUCGGCGACUCGCUGAUGUCg -3'
miRNA:   3'- -CACUGGUAGCCGCUGAGCGACUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.