Results 21 - 40 of 95 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 94668 | 0.66 | 0.977892 |
Target: 5'- ------gGCCcaccuCGCUCUccUCGCGCUCGc -3' miRNA: 3'- uauauugCGGc----GCGAGA--AGCGCGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 136884 | 0.66 | 0.977892 |
Target: 5'- -gGUGGCGCCG-GUg-UUCGCGgUCGa -3' miRNA: 3'- uaUAUUGCGGCgCGagAAGCGCgAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 135898 | 0.66 | 0.977892 |
Target: 5'- ---cGGCGUCGCGCUCgUCGUcaUCGu -3' miRNA: 3'- uauaUUGCGGCGCGAGaAGCGcgAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 115558 | 0.66 | 0.977892 |
Target: 5'- ---gAGCGCCGUGCUg--CGCGgaCGu -3' miRNA: 3'- uauaUUGCGGCGCGAgaaGCGCgaGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 197220 | 0.66 | 0.977892 |
Target: 5'- -cGUuguCGUCGCGCUCgUCGUcCUCGu -3' miRNA: 3'- uaUAuu-GCGGCGCGAGaAGCGcGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 154895 | 0.66 | 0.97548 |
Target: 5'- ---cGGCGCgagaaCGUGCUCUUCGaCGC-CGa -3' miRNA: 3'- uauaUUGCG-----GCGCGAGAAGC-GCGaGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 138970 | 0.66 | 0.97548 |
Target: 5'- cAUGUAcCGCCGCcugcugccGCUCUucaUCGUGCcCGa -3' miRNA: 3'- -UAUAUuGCGGCG--------CGAGA---AGCGCGaGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 174444 | 0.66 | 0.97548 |
Target: 5'- ----cACGCaCGCGCUggugUCGCuGCUCGc -3' miRNA: 3'- uauauUGCG-GCGCGAga--AGCG-CGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 43386 | 0.66 | 0.97548 |
Target: 5'- --cUGGCGCCGCcuggccaugGcCUCUUCGCuuUCGg -3' miRNA: 3'- uauAUUGCGGCG---------C-GAGAAGCGcgAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 30711 | 0.66 | 0.97548 |
Target: 5'- ---cGGCGCCGCggGCUCaugUCGCGUg-- -3' miRNA: 3'- uauaUUGCGGCG--CGAGa--AGCGCGagc -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 2608 | 0.66 | 0.97548 |
Target: 5'- ---cGACGCCGUgccgacgcccagGCUCUUgGC-CUCGa -3' miRNA: 3'- uauaUUGCGGCG------------CGAGAAgCGcGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 118588 | 0.67 | 0.973944 |
Target: 5'- ---cGugGCgGCGCUCagucgccggcaccCGCGCUCGc -3' miRNA: 3'- uauaUugCGgCGCGAGaa-----------GCGCGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 128065 | 0.67 | 0.973151 |
Target: 5'- ----cGCGCCGCGCgaugccgcccaugggC-UCGCGCUgGa -3' miRNA: 3'- uauauUGCGGCGCGa--------------GaAGCGCGAgC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 187697 | 0.67 | 0.972882 |
Target: 5'- ---gGGCGaCUGCGUguacCUgaucUCGCGCUCGg -3' miRNA: 3'- uauaUUGC-GGCGCGa---GA----AGCGCGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 131458 | 0.67 | 0.972882 |
Target: 5'- ---gAAgGCCGCGCUCUcgGC-CUCGu -3' miRNA: 3'- uauaUUgCGGCGCGAGAagCGcGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 166722 | 0.67 | 0.972882 |
Target: 5'- ---gGGCGUCGCGCag-UCGCGCa-- -3' miRNA: 3'- uauaUUGCGGCGCGagaAGCGCGagc -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 165945 | 0.67 | 0.970091 |
Target: 5'- ----cGCGCagcaGCGC-CgugUCGUGCUCGg -3' miRNA: 3'- uauauUGCGg---CGCGaGa--AGCGCGAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 137623 | 0.67 | 0.970091 |
Target: 5'- ---gGACGCCuacCGCUCgcgcaUCGCGgUCGa -3' miRNA: 3'- uauaUUGCGGc--GCGAGa----AGCGCgAGC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 127026 | 0.67 | 0.967099 |
Target: 5'- ---cGACGCCGcCGCggugCccgUCGCGCUgGc -3' miRNA: 3'- uauaUUGCGGC-GCGa---Ga--AGCGCGAgC- -5' |
|||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 36364 | 0.67 | 0.967099 |
Target: 5'- --cUGGCGUgGCGCggCUUCGCGUg-- -3' miRNA: 3'- uauAUUGCGgCGCGa-GAAGCGCGagc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home