miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14302 5' -51.4 NC_003521.1 + 49992 0.71 0.934474
Target:  5'- ----aGGGAGCCGGGUcguccagcgagGAcaagGAGGAAAGg -3'
miRNA:   3'- cuguaCCCUCGGUCCA-----------CU----UUCCUUUC- -5'
14302 5' -51.4 NC_003521.1 + 98227 0.72 0.918282
Target:  5'- cGGCGUGGGAGgCGGG-GAGGcGGggGc -3'
miRNA:   3'- -CUGUACCCUCgGUCCaCUUU-CCuuUc -5'
14302 5' -51.4 NC_003521.1 + 233555 0.72 0.906266
Target:  5'- cGACGUGGGAucCCAGGUGAcgauccGGGAGc- -3'
miRNA:   3'- -CUGUACCCUc-GGUCCACUu-----UCCUUuc -5'
14302 5' -51.4 NC_003521.1 + 195351 0.78 0.658979
Target:  5'- cGugGUGGuGGGCCGGGUGAAGGuGAcgcccGAGg -3'
miRNA:   3'- -CugUACC-CUCGGUCCACUUUC-CU-----UUC- -5'
14302 5' -51.4 NC_003521.1 + 4189 1.1 0.009975
Target:  5'- gGACAUGGGAGCCAGGUGAAAGGAAAGg -3'
miRNA:   3'- -CUGUACCCUCGGUCCACUUUCCUUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.