miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14307 3' -59.6 NC_003521.1 + 155153 0.66 0.881177
Target:  5'- gUGCUGGacgccggcucggaacAGCUGGCGGcCGCGGcuGCCg -3'
miRNA:   3'- uGCGACU---------------UCGGCCGCCcGUGCU--UGGg -5'
14307 3' -59.6 NC_003521.1 + 13778 0.66 0.878501
Target:  5'- aACGCU-AGGCCGGUucucagaccGaGGCGCGuuUCCa -3'
miRNA:   3'- -UGCGAcUUCGGCCG---------C-CCGUGCuuGGG- -5'
14307 3' -59.6 NC_003521.1 + 88766 0.66 0.878501
Target:  5'- -aGCUGAAGCUGacggaccuGCGGGUgaagcaccgcuGCGGccuggugaaGCCCg -3'
miRNA:   3'- ugCGACUUCGGC--------CGCCCG-----------UGCU---------UGGG- -5'
14307 3' -59.6 NC_003521.1 + 102784 0.66 0.878501
Target:  5'- uGCGCgaUGAcgcGCCGGCGGcCGCcAGCUCg -3'
miRNA:   3'- -UGCG--ACUu--CGGCCGCCcGUGcUUGGG- -5'
14307 3' -59.6 NC_003521.1 + 76977 0.66 0.878501
Target:  5'- uGCGCgUGAuGCUGGCGgcgaugggcaGGCACGGcaucauGCCg -3'
miRNA:   3'- -UGCG-ACUuCGGCCGC----------CCGUGCU------UGGg -5'
14307 3' -59.6 NC_003521.1 + 143894 0.66 0.878501
Target:  5'- cCGCUGcguGGCCGuauuccaggaGaCGGGCACGGcgcGCCg -3'
miRNA:   3'- uGCGACu--UCGGC----------C-GCCCGUGCU---UGGg -5'
14307 3' -59.6 NC_003521.1 + 219273 0.66 0.878501
Target:  5'- cCGCaGggGCUGGCacaugaGCGGGCCCa -3'
miRNA:   3'- uGCGaCuuCGGCCGcccg--UGCUUGGG- -5'
14307 3' -59.6 NC_003521.1 + 101 0.66 0.878501
Target:  5'- gACGUguuucGGGCCGGCGGGUcgucGCGGggACUg -3'
miRNA:   3'- -UGCGac---UUCGGCCGCCCG----UGCU--UGGg -5'
14307 3' -59.6 NC_003521.1 + 166328 0.66 0.878501
Target:  5'- gGCGUUGAAGUagaagGGCGGcaccaGCuCGaAGCCCa -3'
miRNA:   3'- -UGCGACUUCGg----CCGCC-----CGuGC-UUGGG- -5'
14307 3' -59.6 NC_003521.1 + 200329 0.66 0.878501
Target:  5'- gACGUguuucGGGCCGGCGGGUcgucGCGGggACUg -3'
miRNA:   3'- -UGCGac---UUCGGCCGCCCG----UGCU--UGGg -5'
14307 3' -59.6 NC_003521.1 + 206137 0.66 0.878501
Target:  5'- gAUGCUGAgaacgGGCCGGgGaaaGGCcucCGAgaaGCCCa -3'
miRNA:   3'- -UGCGACU-----UCGGCCgC---CCGu--GCU---UGGG- -5'
14307 3' -59.6 NC_003521.1 + 240650 0.66 0.878501
Target:  5'- gACGUguuucGGGCCGGCGGGUcgucGCGGggACUg -3'
miRNA:   3'- -UGCGac---UUCGGCCGCCCG----UGCU--UGGg -5'
14307 3' -59.6 NC_003521.1 + 234785 0.66 0.878501
Target:  5'- cCGCUGggGCaCGGCuuacucgucGGGCuccuCGGcCUCg -3'
miRNA:   3'- uGCGACuuCG-GCCG---------CCCGu---GCUuGGG- -5'
14307 3' -59.6 NC_003521.1 + 110264 0.66 0.878501
Target:  5'- gGCGCuUGAAG-CGGCuGaGCACGAaggcGCUCa -3'
miRNA:   3'- -UGCG-ACUUCgGCCGcC-CGUGCU----UGGG- -5'
14307 3' -59.6 NC_003521.1 + 87473 0.66 0.878501
Target:  5'- aGCGCUGuAG-CGGCGG-C-CGAagguGCCCa -3'
miRNA:   3'- -UGCGACuUCgGCCGCCcGuGCU----UGGG- -5'
14307 3' -59.6 NC_003521.1 + 30337 0.66 0.878501
Target:  5'- uGCGCcagcGAGUCGGC-GGCGCGcACCa -3'
miRNA:   3'- -UGCGac--UUCGGCCGcCCGUGCuUGGg -5'
14307 3' -59.6 NC_003521.1 + 20678 0.66 0.876473
Target:  5'- gGCGCUGuucaucaccuucacGGGCCuggccuuucugGGCGGaCGCG-ACCCg -3'
miRNA:   3'- -UGCGAC--------------UUCGG-----------CCGCCcGUGCuUGGG- -5'
14307 3' -59.6 NC_003521.1 + 216607 0.66 0.874427
Target:  5'- gACGgaGAcAGCagcagucgacgguaGGCGGGCGCGccGACgCCg -3'
miRNA:   3'- -UGCgaCU-UCGg-------------CCGCCCGUGC--UUG-GG- -5'
14307 3' -59.6 NC_003521.1 + 213524 0.66 0.871673
Target:  5'- uCGgUGAGGauGGCGGGCAgcucgGAGCaCCa -3'
miRNA:   3'- uGCgACUUCggCCGCCCGUg----CUUG-GG- -5'
14307 3' -59.6 NC_003521.1 + 38635 0.66 0.871673
Target:  5'- gGCGC----GCCGGCuGGGUgucccGCGggUCCg -3'
miRNA:   3'- -UGCGacuuCGGCCG-CCCG-----UGCuuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.