miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 124467 0.69 0.94386
Target:  5'- aCGCGuUCGCCgCCGCG-CUCGcgGuCCGu -3'
miRNA:   3'- -GCGC-AGCGG-GGCGUaGAGUuuUuGGC- -5'
14308 3' -53.8 NC_003521.1 + 179376 0.69 0.945602
Target:  5'- aCGCGUCGCUCggcucaccucuugaGCGUCUUAAaguuauccAAACCGu -3'
miRNA:   3'- -GCGCAGCGGGg-------------CGUAGAGUU--------UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 188757 0.69 0.948146
Target:  5'- aGUGUaccgGCCCCGCGUCaUCu---GCCGc -3'
miRNA:   3'- gCGCAg---CGGGGCGUAG-AGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 72754 0.69 0.952209
Target:  5'- uGCaGcC-CCCCGCGUCUCGAGcACCc -3'
miRNA:   3'- gCG-CaGcGGGGCGUAGAGUUUuUGGc -5'
14308 3' -53.8 NC_003521.1 + 32996 0.68 0.956053
Target:  5'- gGCGgaugaaGCCCCGCAggcUCUCG---GCCa -3'
miRNA:   3'- gCGCag----CGGGGCGU---AGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 60875 0.68 0.956053
Target:  5'- gGUGUgGUgCCGCAguUCUCGGAGAUCu -3'
miRNA:   3'- gCGCAgCGgGGCGU--AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 34647 0.71 0.881776
Target:  5'- uCGCGgcccuggcCGCCCUGCuccugggcuUCUCGGAGGCCu -3'
miRNA:   3'- -GCGCa-------GCGGGGCGu--------AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 160362 0.71 0.888536
Target:  5'- gGCGUCGCCgCCuuc-CUCAAGAACCc -3'
miRNA:   3'- gCGCAGCGG-GGcguaGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 190307 0.71 0.894435
Target:  5'- gCGCGUCauGUCCgGCGUCUUAAGAagauauauaagacACCGu -3'
miRNA:   3'- -GCGCAG--CGGGgCGUAGAGUUUU-------------UGGC- -5'
14308 3' -53.8 NC_003521.1 + 109758 0.7 0.913382
Target:  5'- cCGCGgucgcCGCCaCCGCGUC-CGAGGcccGCCGc -3'
miRNA:   3'- -GCGCa----GCGG-GGCGUAGaGUUUU---UGGC- -5'
14308 3' -53.8 NC_003521.1 + 27726 0.7 0.929647
Target:  5'- gCGCGUCGagCCGCGUCUCcuccucuauauAAAAcuuGCCGu -3'
miRNA:   3'- -GCGCAGCggGGCGUAGAG-----------UUUU---UGGC- -5'
14308 3' -53.8 NC_003521.1 + 170611 0.69 0.93935
Target:  5'- uGCG-CGCCaaGCGcUUCGAGGGCCGa -3'
miRNA:   3'- gCGCaGCGGggCGUaGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 32524 0.71 0.874804
Target:  5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3'
miRNA:   3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5'
14308 3' -53.8 NC_003521.1 + 171015 0.72 0.852666
Target:  5'- uGUGUCGCCUcaagugcgagCGuCAUCUCGAcgGCCGc -3'
miRNA:   3'- gCGCAGCGGG----------GC-GUAGAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 12777 0.72 0.844896
Target:  5'- gCGCGUgCGCCCCGauuaccCUCAGAucuCCGa -3'
miRNA:   3'- -GCGCA-GCGGGGCgua---GAGUUUuu-GGC- -5'
14308 3' -53.8 NC_003521.1 + 121025 0.73 0.785735
Target:  5'- cCGUGUCGCCCCGCuggcgC-CGGAaggugGACCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGua---GaGUUU-----UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 109725 0.74 0.748854
Target:  5'- cCGCGcCGCCCCGCcGUC-CGGAGcCCGc -3'
miRNA:   3'- -GCGCaGCGGGGCG-UAGaGUUUUuGGC- -5'
14308 3' -53.8 NC_003521.1 + 146742 0.74 0.72883
Target:  5'- gCGCGUCGCCuCCGgGUgaCUCAGacacgccgcuuugGAACCGg -3'
miRNA:   3'- -GCGCAGCGG-GGCgUA--GAGUU-------------UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 86147 0.75 0.690766
Target:  5'- aCGCGguagCGCUCCaGCGUCUCGcu-GCCGg -3'
miRNA:   3'- -GCGCa---GCGGGG-CGUAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 90537 0.65 0.991898
Target:  5'- uCGCGaUgGCCCCGCGaCagCAcccacgaGAGGCCGg -3'
miRNA:   3'- -GCGC-AgCGGGGCGUaGa-GU-------UUUUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.