miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 90537 0.65 0.991898
Target:  5'- uCGCGaUgGCCCCGCGaCagCAcccacgaGAGGCCGg -3'
miRNA:   3'- -GCGC-AgCGGGGCGUaGa-GU-------UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 144695 0.66 0.990897
Target:  5'- aGCGggaCGCCgCCGCAUCauguggggcgUCucGAACCu -3'
miRNA:   3'- gCGCa--GCGG-GGCGUAG----------AGuuUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 130505 0.66 0.989673
Target:  5'- cCGCGUCaugaugGCCCUGCGgcugCcCGAgcAGACCGu -3'
miRNA:   3'- -GCGCAG------CGGGGCGUa---GaGUU--UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 114109 0.66 0.988325
Target:  5'- cCGCGcCGCCUCGgAUCUgCuc--ACCGg -3'
miRNA:   3'- -GCGCaGCGGGGCgUAGA-GuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 115799 0.66 0.986844
Target:  5'- gCGCGUCaGCaguCCGCcgCUCAGGcGCgGg -3'
miRNA:   3'- -GCGCAG-CGg--GGCGuaGAGUUUuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 70526 0.66 0.988325
Target:  5'- aCGUGacCGCCUCGCG-CUCGGccGGCCGa -3'
miRNA:   3'- -GCGCa-GCGGGGCGUaGAGUUu-UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 99730 0.66 0.990897
Target:  5'- gGCGUCGUCgCGCAcccagccgCUCAuuuGGCCc -3'
miRNA:   3'- gCGCAGCGGgGCGUa-------GAGUuu-UUGGc -5'
14308 3' -53.8 NC_003521.1 + 187715 0.66 0.990897
Target:  5'- uGCGUCGCCagcgguaCGUgacuuGUCUCAuc-GCCa -3'
miRNA:   3'- gCGCAGCGGg------GCG-----UAGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 116215 0.66 0.990897
Target:  5'- uCGcCGUCGCCgCCGCuucgucgucCUCGucGGCCa -3'
miRNA:   3'- -GC-GCAGCGG-GGCGua-------GAGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 4372 0.66 0.990897
Target:  5'- uCGCGgcccgCGUCCCGCucgCUCAcucACCc -3'
miRNA:   3'- -GCGCa----GCGGGGCGua-GAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 130306 0.66 0.985223
Target:  5'- cCGCGgCGCCgCGCAUC-CAGGu-CCa -3'
miRNA:   3'- -GCGCaGCGGgGCGUAGaGUUUuuGGc -5'
14308 3' -53.8 NC_003521.1 + 105573 0.66 0.986844
Target:  5'- gGCGUcCGCCgCCGUGUCgUCGccgccGCCGg -3'
miRNA:   3'- gCGCA-GCGG-GGCGUAG-AGUuuu--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 133389 0.66 0.988183
Target:  5'- gCGCGgCGgUCCGCGcuuucgcgucggcUCUCAGGAACUa -3'
miRNA:   3'- -GCGCaGCgGGGCGU-------------AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 204049 0.66 0.986844
Target:  5'- gCGCGUgGCCCUGCcaGUCgccgCAGucgcACCa -3'
miRNA:   3'- -GCGCAgCGGGGCG--UAGa---GUUuu--UGGc -5'
14308 3' -53.8 NC_003521.1 + 225399 0.66 0.988325
Target:  5'- cCGCGUC-CCUCGCAcccggCUCAAAu-CUGg -3'
miRNA:   3'- -GCGCAGcGGGGCGUa----GAGUUUuuGGC- -5'
14308 3' -53.8 NC_003521.1 + 222386 0.66 0.989673
Target:  5'- aGCGgcacagGCCgCGCGUCUUGAgcAGGCCGc -3'
miRNA:   3'- gCGCag----CGGgGCGUAGAGUU--UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 72556 0.66 0.989673
Target:  5'- uGuCGUCGUCUCGCGaccUCUCAGcgucGCCa -3'
miRNA:   3'- gC-GCAGCGGGGCGU---AGAGUUuu--UGGc -5'
14308 3' -53.8 NC_003521.1 + 196374 0.66 0.985223
Target:  5'- gGCGUUGUaCUCGCAUCgcc-GAGCCGc -3'
miRNA:   3'- gCGCAGCG-GGGCGUAGaguuUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 220707 0.66 0.988325
Target:  5'- uGCGUCGCgCCCGuCGUCggUCGGuuuACgGg -3'
miRNA:   3'- gCGCAGCG-GGGC-GUAG--AGUUuu-UGgC- -5'
14308 3' -53.8 NC_003521.1 + 119894 0.66 0.988325
Target:  5'- -uCGUCGCCCCGCGggu---GGGCCu -3'
miRNA:   3'- gcGCAGCGGGGCGUagaguuUUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.