Results 1 - 20 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 10407 | 1.09 | 0.008735 |
Target: 5'- cCGCGUCGCCCCGCAUCUCAAAAACCGc -3' miRNA: 3'- -GCGCAGCGGGGCGUAGAGUUUUUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 193152 | 0.78 | 0.512901 |
Target: 5'- cCGUGUCGUCggcgcacaGCAUCUCAGGAGCCGg -3' miRNA: 3'- -GCGCAGCGGgg------CGUAGAGUUUUUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 236380 | 0.78 | 0.561361 |
Target: 5'- cCGCaUCGCUCCGCAUgCUCGAGGACUc -3' miRNA: 3'- -GCGcAGCGGGGCGUA-GAGUUUUUGGc -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 118779 | 0.76 | 0.640993 |
Target: 5'- -aCGUCGCCCUGCAUCUCGcu-GCgGa -3' miRNA: 3'- gcGCAGCGGGGCGUAGAGUuuuUGgC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 102442 | 0.76 | 0.650992 |
Target: 5'- aCGCGcCGCaggCCGCGgcagaUCUCGAAGACCGu -3' miRNA: 3'- -GCGCaGCGg--GGCGU-----AGAGUUUUUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 195862 | 0.75 | 0.690766 |
Target: 5'- gCGCuGUCGCCUCGC-UCUCGGGAcuGCCc -3' miRNA: 3'- -GCG-CAGCGGGGCGuAGAGUUUU--UGGc -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 86147 | 0.75 | 0.690766 |
Target: 5'- aCGCGguagCGCUCCaGCGUCUCGcu-GCCGg -3' miRNA: 3'- -GCGCa---GCGGGG-CGUAGAGUuuuUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 146742 | 0.74 | 0.72883 |
Target: 5'- gCGCGUCGCCuCCGgGUgaCUCAGacacgccgcuuugGAACCGg -3' miRNA: 3'- -GCGCAGCGG-GGCgUA--GAGUU-------------UUUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 109725 | 0.74 | 0.748854 |
Target: 5'- cCGCGcCGCCCCGCcGUC-CGGAGcCCGc -3' miRNA: 3'- -GCGCaGCGGGGCG-UAGaGUUUUuGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 121025 | 0.73 | 0.785735 |
Target: 5'- cCGUGUCGCCCCGCuggcgC-CGGAaggugGACCGc -3' miRNA: 3'- -GCGCAGCGGGGCGua---GaGUUU-----UUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 154423 | 0.73 | 0.794647 |
Target: 5'- gCGCGUC-CCCCGCGUCgacCGcuGGCCc -3' miRNA: 3'- -GCGCAGcGGGGCGUAGa--GUuuUUGGc -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 171593 | 0.73 | 0.820507 |
Target: 5'- --gGUCuCCCCGUcUCUCAGAGACCa -3' miRNA: 3'- gcgCAGcGGGGCGuAGAGUUUUUGGc -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 12777 | 0.72 | 0.844896 |
Target: 5'- gCGCGUgCGCCCCGauuaccCUCAGAucuCCGa -3' miRNA: 3'- -GCGCA-GCGGGGCgua---GAGUUUuu-GGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 171015 | 0.72 | 0.852666 |
Target: 5'- uGUGUCGCCUcaagugcgagCGuCAUCUCGAcgGCCGc -3' miRNA: 3'- gCGCAGCGGG----------GC-GUAGAGUUuuUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 32524 | 0.71 | 0.874804 |
Target: 5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3' miRNA: 3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 34647 | 0.71 | 0.881776 |
Target: 5'- uCGCGgcccuggcCGCCCUGCuccugggcuUCUCGGAGGCCu -3' miRNA: 3'- -GCGCa-------GCGGGGCGu--------AGAGUUUUUGGc -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 144941 | 0.71 | 0.881776 |
Target: 5'- gCGCGUCGCCgCGCuggCUCGcgacgaAGGGCUGc -3' miRNA: 3'- -GCGCAGCGGgGCGua-GAGU------UUUUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 97463 | 0.71 | 0.881776 |
Target: 5'- uCGuCGUUGCCgCCGCuUCUCAcccgcGAGCCGc -3' miRNA: 3'- -GC-GCAGCGG-GGCGuAGAGUu----UUUGGC- -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 160362 | 0.71 | 0.888536 |
Target: 5'- gGCGUCGCCgCCuuc-CUCAAGAACCc -3' miRNA: 3'- gCGCAGCGG-GGcguaGAGUUUUUGGc -5' |
|||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 190307 | 0.71 | 0.894435 |
Target: 5'- gCGCGUCauGUCCgGCGUCUUAAGAagauauauaagacACCGu -3' miRNA: 3'- -GCGCAG--CGGGgCGUAGAGUUUU-------------UGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home