miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 10407 1.09 0.008735
Target:  5'- cCGCGUCGCCCCGCAUCUCAAAAACCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGUAGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 193152 0.78 0.512901
Target:  5'- cCGUGUCGUCggcgcacaGCAUCUCAGGAGCCGg -3'
miRNA:   3'- -GCGCAGCGGgg------CGUAGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 236380 0.78 0.561361
Target:  5'- cCGCaUCGCUCCGCAUgCUCGAGGACUc -3'
miRNA:   3'- -GCGcAGCGGGGCGUA-GAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 118779 0.76 0.640993
Target:  5'- -aCGUCGCCCUGCAUCUCGcu-GCgGa -3'
miRNA:   3'- gcGCAGCGGGGCGUAGAGUuuuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 102442 0.76 0.650992
Target:  5'- aCGCGcCGCaggCCGCGgcagaUCUCGAAGACCGu -3'
miRNA:   3'- -GCGCaGCGg--GGCGU-----AGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 195862 0.75 0.690766
Target:  5'- gCGCuGUCGCCUCGC-UCUCGGGAcuGCCc -3'
miRNA:   3'- -GCG-CAGCGGGGCGuAGAGUUUU--UGGc -5'
14308 3' -53.8 NC_003521.1 + 86147 0.75 0.690766
Target:  5'- aCGCGguagCGCUCCaGCGUCUCGcu-GCCGg -3'
miRNA:   3'- -GCGCa---GCGGGG-CGUAGAGUuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 146742 0.74 0.72883
Target:  5'- gCGCGUCGCCuCCGgGUgaCUCAGacacgccgcuuugGAACCGg -3'
miRNA:   3'- -GCGCAGCGG-GGCgUA--GAGUU-------------UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 109725 0.74 0.748854
Target:  5'- cCGCGcCGCCCCGCcGUC-CGGAGcCCGc -3'
miRNA:   3'- -GCGCaGCGGGGCG-UAGaGUUUUuGGC- -5'
14308 3' -53.8 NC_003521.1 + 121025 0.73 0.785735
Target:  5'- cCGUGUCGCCCCGCuggcgC-CGGAaggugGACCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGua---GaGUUU-----UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 154423 0.73 0.794647
Target:  5'- gCGCGUC-CCCCGCGUCgacCGcuGGCCc -3'
miRNA:   3'- -GCGCAGcGGGGCGUAGa--GUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 171593 0.73 0.820507
Target:  5'- --gGUCuCCCCGUcUCUCAGAGACCa -3'
miRNA:   3'- gcgCAGcGGGGCGuAGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 12777 0.72 0.844896
Target:  5'- gCGCGUgCGCCCCGauuaccCUCAGAucuCCGa -3'
miRNA:   3'- -GCGCA-GCGGGGCgua---GAGUUUuu-GGC- -5'
14308 3' -53.8 NC_003521.1 + 171015 0.72 0.852666
Target:  5'- uGUGUCGCCUcaagugcgagCGuCAUCUCGAcgGCCGc -3'
miRNA:   3'- gCGCAGCGGG----------GC-GUAGAGUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 32524 0.71 0.874804
Target:  5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3'
miRNA:   3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5'
14308 3' -53.8 NC_003521.1 + 34647 0.71 0.881776
Target:  5'- uCGCGgcccuggcCGCCCUGCuccugggcuUCUCGGAGGCCu -3'
miRNA:   3'- -GCGCa-------GCGGGGCGu--------AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 144941 0.71 0.881776
Target:  5'- gCGCGUCGCCgCGCuggCUCGcgacgaAGGGCUGc -3'
miRNA:   3'- -GCGCAGCGGgGCGua-GAGU------UUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 97463 0.71 0.881776
Target:  5'- uCGuCGUUGCCgCCGCuUCUCAcccgcGAGCCGc -3'
miRNA:   3'- -GC-GCAGCGG-GGCGuAGAGUu----UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 160362 0.71 0.888536
Target:  5'- gGCGUCGCCgCCuuc-CUCAAGAACCc -3'
miRNA:   3'- gCGCAGCGG-GGcguaGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 190307 0.71 0.894435
Target:  5'- gCGCGUCauGUCCgGCGUCUUAAGAagauauauaagacACCGu -3'
miRNA:   3'- -GCGCAG--CGGGgCGUAGAGUUUU-------------UGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.