Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14308 | 3' | -53.8 | NC_003521.1 | + | 80 | 0.68 | 0.963098 |
Target: 5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3' miRNA: 3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 2358 | 0.69 | 0.93935 |
Target: 5'- cCGCGUcucCGCCCCGCccg-CcGAGGCCGc -3' miRNA: 3'- -GCGCA---GCGGGGCGuagaGuUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 4372 | 0.66 | 0.990897 |
Target: 5'- uCGCGgcccgCGUCCCGCucgCUCAcucACCc -3' miRNA: 3'- -GCGCa----GCGGGGCGua-GAGUuuuUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 4536 | 0.66 | 0.988325 |
Target: 5'- cCGCaUCGCCCCgagGCGUUgcucugaggaUCGAGuGCCGa -3' miRNA: 3'- -GCGcAGCGGGG---CGUAG----------AGUUUuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 5664 | 0.66 | 0.990897 |
Target: 5'- aCGCGaCGCCaauCGCG-CUCGGAGuCCGu -3' miRNA: 3'- -GCGCaGCGGg--GCGUaGAGUUUUuGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 10407 | 1.09 | 0.008735 |
Target: 5'- cCGCGUCGCCCCGCAUCUCAAAAACCGc -3' miRNA: 3'- -GCGCAGCGGGGCGUAGAGUUUUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 12777 | 0.72 | 0.844896 |
Target: 5'- gCGCGUgCGCCCCGauuaccCUCAGAucuCCGa -3' miRNA: 3'- -GCGCA-GCGGGGCgua---GAGUUUuu-GGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 16217 | 0.66 | 0.990897 |
Target: 5'- gGCGgCGCCCUGCcgC-Cu--GGCCGa -3' miRNA: 3'- gCGCaGCGGGGCGuaGaGuuuUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 17220 | 0.68 | 0.966307 |
Target: 5'- aGCGUCGCCgUCGCG-CgguauggCAAgcGAGCCGg -3' miRNA: 3'- gCGCAGCGG-GGCGUaGa------GUU--UUUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 18804 | 0.66 | 0.990897 |
Target: 5'- uGCGuUCGCCCUGCcug-CAGAuGCUGa -3' miRNA: 3'- gCGC-AGCGGGGCGuagaGUUUuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 20186 | 0.67 | 0.974745 |
Target: 5'- cCGCGUCGCgaCGuCAUCgUCGGGAACUc -3' miRNA: 3'- -GCGCAGCGggGC-GUAG-AGUUUUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 27726 | 0.7 | 0.929647 |
Target: 5'- gCGCGUCGagCCGCGUCUCcuccucuauauAAAAcuuGCCGu -3' miRNA: 3'- -GCGCAGCggGGCGUAGAG-----------UUUU---UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 28773 | 0.68 | 0.963098 |
Target: 5'- uGUGUcguuucucuaugCGCCCCGCGcccUCUCAu--GCCa -3' miRNA: 3'- gCGCA------------GCGGGGCGU---AGAGUuuuUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 29352 | 0.69 | 0.934612 |
Target: 5'- uGCGcugCGCCCUGCGcCUCAu-GGCCu -3' miRNA: 3'- gCGCa--GCGGGGCGUaGAGUuuUUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 30234 | 0.67 | 0.977181 |
Target: 5'- gGCGUCGCgCUGCAggUCcgcgCGGuuGCCGu -3' miRNA: 3'- gCGCAGCGgGGCGU--AGa---GUUuuUGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 30868 | 0.68 | 0.972125 |
Target: 5'- gGCGUUGUugcucaguUCCGCGUC-CGAGAggGCCGa -3' miRNA: 3'- gCGCAGCG--------GGGCGUAGaGUUUU--UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 32253 | 0.7 | 0.907505 |
Target: 5'- aGCGUCagGCCCCGgAUgUCAuacuuGCCGu -3' miRNA: 3'- gCGCAG--CGGGGCgUAgAGUuuu--UGGC- -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 32524 | 0.71 | 0.874804 |
Target: 5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3' miRNA: 3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 32996 | 0.68 | 0.956053 |
Target: 5'- gGCGgaugaaGCCCCGCAggcUCUCG---GCCa -3' miRNA: 3'- gCGCag----CGGGGCGU---AGAGUuuuUGGc -5' |
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14308 | 3' | -53.8 | NC_003521.1 | + | 34647 | 0.71 | 0.881776 |
Target: 5'- uCGCGgcccuggcCGCCCUGCuccugggcuUCUCGGAGGCCu -3' miRNA: 3'- -GCGCa-------GCGGGGCGu--------AGAGUUUUUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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