miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 80 0.68 0.963098
Target:  5'- gCGUGUCGCUugCCGCGggcgugCagGGAGGCCGa -3'
miRNA:   3'- -GCGCAGCGG--GGCGUa-----GagUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 2358 0.69 0.93935
Target:  5'- cCGCGUcucCGCCCCGCccg-CcGAGGCCGc -3'
miRNA:   3'- -GCGCA---GCGGGGCGuagaGuUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 4372 0.66 0.990897
Target:  5'- uCGCGgcccgCGUCCCGCucgCUCAcucACCc -3'
miRNA:   3'- -GCGCa----GCGGGGCGua-GAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 4536 0.66 0.988325
Target:  5'- cCGCaUCGCCCCgagGCGUUgcucugaggaUCGAGuGCCGa -3'
miRNA:   3'- -GCGcAGCGGGG---CGUAG----------AGUUUuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 5664 0.66 0.990897
Target:  5'- aCGCGaCGCCaauCGCG-CUCGGAGuCCGu -3'
miRNA:   3'- -GCGCaGCGGg--GCGUaGAGUUUUuGGC- -5'
14308 3' -53.8 NC_003521.1 + 10407 1.09 0.008735
Target:  5'- cCGCGUCGCCCCGCAUCUCAAAAACCGc -3'
miRNA:   3'- -GCGCAGCGGGGCGUAGAGUUUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 12777 0.72 0.844896
Target:  5'- gCGCGUgCGCCCCGauuaccCUCAGAucuCCGa -3'
miRNA:   3'- -GCGCA-GCGGGGCgua---GAGUUUuu-GGC- -5'
14308 3' -53.8 NC_003521.1 + 16217 0.66 0.990897
Target:  5'- gGCGgCGCCCUGCcgC-Cu--GGCCGa -3'
miRNA:   3'- gCGCaGCGGGGCGuaGaGuuuUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 17220 0.68 0.966307
Target:  5'- aGCGUCGCCgUCGCG-CgguauggCAAgcGAGCCGg -3'
miRNA:   3'- gCGCAGCGG-GGCGUaGa------GUU--UUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 18804 0.66 0.990897
Target:  5'- uGCGuUCGCCCUGCcug-CAGAuGCUGa -3'
miRNA:   3'- gCGC-AGCGGGGCGuagaGUUUuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 20186 0.67 0.974745
Target:  5'- cCGCGUCGCgaCGuCAUCgUCGGGAACUc -3'
miRNA:   3'- -GCGCAGCGggGC-GUAG-AGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 27726 0.7 0.929647
Target:  5'- gCGCGUCGagCCGCGUCUCcuccucuauauAAAAcuuGCCGu -3'
miRNA:   3'- -GCGCAGCggGGCGUAGAG-----------UUUU---UGGC- -5'
14308 3' -53.8 NC_003521.1 + 28773 0.68 0.963098
Target:  5'- uGUGUcguuucucuaugCGCCCCGCGcccUCUCAu--GCCa -3'
miRNA:   3'- gCGCA------------GCGGGGCGU---AGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 29352 0.69 0.934612
Target:  5'- uGCGcugCGCCCUGCGcCUCAu-GGCCu -3'
miRNA:   3'- gCGCa--GCGGGGCGUaGAGUuuUUGGc -5'
14308 3' -53.8 NC_003521.1 + 30234 0.67 0.977181
Target:  5'- gGCGUCGCgCUGCAggUCcgcgCGGuuGCCGu -3'
miRNA:   3'- gCGCAGCGgGGCGU--AGa---GUUuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 30868 0.68 0.972125
Target:  5'- gGCGUUGUugcucaguUCCGCGUC-CGAGAggGCCGa -3'
miRNA:   3'- gCGCAGCG--------GGGCGUAGaGUUUU--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 32253 0.7 0.907505
Target:  5'- aGCGUCagGCCCCGgAUgUCAuacuuGCCGu -3'
miRNA:   3'- gCGCAG--CGGGGCgUAgAGUuuu--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 32524 0.71 0.874804
Target:  5'- aGCGUCGagaucaagcaCCCCGUAUCUCucacgguuAGCCa -3'
miRNA:   3'- gCGCAGC----------GGGGCGUAGAGuuu-----UUGGc -5'
14308 3' -53.8 NC_003521.1 + 32996 0.68 0.956053
Target:  5'- gGCGgaugaaGCCCCGCAggcUCUCG---GCCa -3'
miRNA:   3'- gCGCag----CGGGGCGU---AGAGUuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 34647 0.71 0.881776
Target:  5'- uCGCGgcccuggcCGCCCUGCuccugggcuUCUCGGAGGCCu -3'
miRNA:   3'- -GCGCa-------GCGGGGCGu--------AGAGUUUUUGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.