miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 3' -53.8 NC_003521.1 + 4536 0.66 0.988325
Target:  5'- cCGCaUCGCCCCgagGCGUUgcucugaggaUCGAGuGCCGa -3'
miRNA:   3'- -GCGcAGCGGGG---CGUAG----------AGUUUuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 119894 0.66 0.988325
Target:  5'- -uCGUCGCCCCGCGggu---GGGCCu -3'
miRNA:   3'- gcGCAGCGGGGCGUagaguuUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 114109 0.66 0.988325
Target:  5'- cCGCGcCGCCUCGgAUCUgCuc--ACCGg -3'
miRNA:   3'- -GCGCaGCGGGGCgUAGA-GuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 70526 0.66 0.988325
Target:  5'- aCGUGacCGCCUCGCG-CUCGGccGGCCGa -3'
miRNA:   3'- -GCGCa-GCGGGGCGUaGAGUUu-UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 220707 0.66 0.988325
Target:  5'- uGCGUCGCgCCCGuCGUCggUCGGuuuACgGg -3'
miRNA:   3'- gCGCAGCG-GGGC-GUAG--AGUUuu-UGgC- -5'
14308 3' -53.8 NC_003521.1 + 133389 0.66 0.988183
Target:  5'- gCGCGgCGgUCCGCGcuuucgcgucggcUCUCAGGAACUa -3'
miRNA:   3'- -GCGCaGCgGGGCGU-------------AGAGUUUUUGGc -5'
14308 3' -53.8 NC_003521.1 + 204049 0.66 0.986844
Target:  5'- gCGCGUgGCCCUGCcaGUCgccgCAGucgcACCa -3'
miRNA:   3'- -GCGCAgCGGGGCG--UAGa---GUUuu--UGGc -5'
14308 3' -53.8 NC_003521.1 + 49305 0.66 0.986844
Target:  5'- gCGCGUcgagCGCCCCGgucgcauucgaCGUCUCuggGAAuGCCGu -3'
miRNA:   3'- -GCGCA----GCGGGGC-----------GUAGAG---UUUuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 135861 0.66 0.986844
Target:  5'- uCGCGgCGcCCCCGCGgcacgaccUUCGAGuAACCGa -3'
miRNA:   3'- -GCGCaGC-GGGGCGUa-------GAGUUU-UUGGC- -5'
14308 3' -53.8 NC_003521.1 + 115799 0.66 0.986844
Target:  5'- gCGCGUCaGCaguCCGCcgCUCAGGcGCgGg -3'
miRNA:   3'- -GCGCAG-CGg--GGCGuaGAGUUUuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 105573 0.66 0.986844
Target:  5'- gGCGUcCGCCgCCGUGUCgUCGccgccGCCGg -3'
miRNA:   3'- gCGCA-GCGG-GGCGUAG-AGUuuu--UGGC- -5'
14308 3' -53.8 NC_003521.1 + 205435 0.66 0.985223
Target:  5'- uCGCG-CGgCCCGCGUcCUC----GCCGa -3'
miRNA:   3'- -GCGCaGCgGGGCGUA-GAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 72319 0.66 0.985223
Target:  5'- gGCGUCGCCguccuCCGCcuccGUCUC----GCCGc -3'
miRNA:   3'- gCGCAGCGG-----GGCG----UAGAGuuuuUGGC- -5'
14308 3' -53.8 NC_003521.1 + 196374 0.66 0.985223
Target:  5'- gGCGUUGUaCUCGCAUCgcc-GAGCCGc -3'
miRNA:   3'- gCGCAGCG-GGGCGUAGaguuUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 205683 0.66 0.985223
Target:  5'- gCGCGUggCGCaCCCGCG-CUCAGucGCgGc -3'
miRNA:   3'- -GCGCA--GCG-GGGCGUaGAGUUuuUGgC- -5'
14308 3' -53.8 NC_003521.1 + 130306 0.66 0.985223
Target:  5'- cCGCGgCGCCgCGCAUC-CAGGu-CCa -3'
miRNA:   3'- -GCGCaGCGGgGCGUAGaGUUUuuGGc -5'
14308 3' -53.8 NC_003521.1 + 192101 0.66 0.985223
Target:  5'- aGCGUCG-CCgGCGUCUCc---ACCu -3'
miRNA:   3'- gCGCAGCgGGgCGUAGAGuuuuUGGc -5'
14308 3' -53.8 NC_003521.1 + 80277 0.67 0.983454
Target:  5'- aGUaUCGCgCCGCGUCUCugucuCCGc -3'
miRNA:   3'- gCGcAGCGgGGCGUAGAGuuuuuGGC- -5'
14308 3' -53.8 NC_003521.1 + 214533 0.67 0.983454
Target:  5'- gCGCGUgGCCCUGgCcuggcCUCG-AGACCGg -3'
miRNA:   3'- -GCGCAgCGGGGC-Gua---GAGUuUUUGGC- -5'
14308 3' -53.8 NC_003521.1 + 224254 0.67 0.983454
Target:  5'- cCG-GUCGCCUCGCAggcgcagcuuUCUCGcuuaaAAAGCCc -3'
miRNA:   3'- -GCgCAGCGGGGCGU----------AGAGU-----UUUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.