Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 14308 | 5' | -54.8 | NC_003521.1 | + | 120555 | 0.73 | 0.772726 |
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Target: 5'- -gCGGuCcCGGGGGagcgccCGGGGAUAACGGa -3' miRNA: 3'- aaGCUuGaGCCCCU------GCCCCUAUUGCC- -5' |
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| 14308 | 5' | -54.8 | NC_003521.1 | + | 92076 | 0.73 | 0.772726 |
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Target: 5'- -gCGGAC-CGGGGGuCGGGGGgugcgcagGGCGGu -3' miRNA: 3'- aaGCUUGaGCCCCU-GCCCCUa-------UUGCC- -5' |
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| 14308 | 5' | -54.8 | NC_003521.1 | + | 156691 | 0.73 | 0.754364 |
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Target: 5'- cUUCGcGCUCGGGGAaaaggugcuggcCGGGGAggAGCGc -3' miRNA: 3'- -AAGCuUGAGCCCCU------------GCCCCUa-UUGCc -5' |
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| 14308 | 5' | -54.8 | NC_003521.1 | + | 93485 | 0.73 | 0.745028 |
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Target: 5'- -cUGAGCUcCGGGGuCGGGcgcgaGAUGGCGGa -3' miRNA: 3'- aaGCUUGA-GCCCCuGCCC-----CUAUUGCC- -5' |
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| 14308 | 5' | -54.8 | NC_003521.1 | + | 166775 | 0.74 | 0.706839 |
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Target: 5'- -gUGAGCUCGGGacaGGCGGGGucgGACGa -3' miRNA: 3'- aaGCUUGAGCCC---CUGCCCCua-UUGCc -5' |
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| 14308 | 5' | -54.8 | NC_003521.1 | + | 18090 | 0.75 | 0.667701 |
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Target: 5'- -aCGAcgGCcgCGGGGACGGaGGAggUAGCGGu -3' miRNA: 3'- aaGCU--UGa-GCCCCUGCC-CCU--AUUGCC- -5' |
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| 14308 | 5' | -54.8 | NC_003521.1 | + | 212883 | 0.75 | 0.638035 |
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Target: 5'- -gUGGACgCGGGcGACGGGGGUGuCGGu -3' miRNA: 3'- aaGCUUGaGCCC-CUGCCCCUAUuGCC- -5' |
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| 14308 | 5' | -54.8 | NC_003521.1 | + | 10464 | 1.09 | 0.007328 |
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Target: 5'- uUUCGAACUCGGGGACGGGGAUAACGGa -3' miRNA: 3'- -AAGCUUGAGCCCCUGCCCCUAUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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