miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14308 5' -54.8 NC_003521.1 + 10464 1.09 0.007328
Target:  5'- uUUCGAACUCGGGGACGGGGAUAACGGa -3'
miRNA:   3'- -AAGCUUGAGCCCCUGCCCCUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 13478 0.66 0.983801
Target:  5'- gUCGAcGgUCuGGGcGACGGGGAacGugGGg -3'
miRNA:   3'- aAGCU-UgAG-CCC-CUGCCCCUa-UugCC- -5'
14308 5' -54.8 NC_003521.1 + 18090 0.75 0.667701
Target:  5'- -aCGAcgGCcgCGGGGACGGaGGAggUAGCGGu -3'
miRNA:   3'- aaGCU--UGa-GCCCCUGCC-CCU--AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 19093 0.67 0.971149
Target:  5'- --gGAGgagGGGGACGGGGAgggagacgacgcgggUGGCGGg -3'
miRNA:   3'- aagCUUgagCCCCUGCCCCU---------------AUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 34064 0.66 0.979891
Target:  5'- cUUGAGCUCGGGGuugaccucguGCaGGGaGGUGugGu -3'
miRNA:   3'- aAGCUUGAGCCCC----------UG-CCC-CUAUugCc -5'
14308 5' -54.8 NC_003521.1 + 35194 0.69 0.921052
Target:  5'- uUUCGGACcCaGGGACaGGGGGcgcGCGGg -3'
miRNA:   3'- -AAGCUUGaGcCCCUG-CCCCUau-UGCC- -5'
14308 5' -54.8 NC_003521.1 + 37530 0.67 0.972768
Target:  5'- -aCGucCUgGGGGugggcaGCGGGGGUcGCGGc -3'
miRNA:   3'- aaGCuuGAgCCCC------UGCCCCUAuUGCC- -5'
14308 5' -54.8 NC_003521.1 + 38233 0.7 0.870859
Target:  5'- -gCGGcCUCGGcGGGCGGGGcgGagacGCGGc -3'
miRNA:   3'- aaGCUuGAGCC-CCUGCCCCuaU----UGCC- -5'
14308 5' -54.8 NC_003521.1 + 39222 0.7 0.884689
Target:  5'- -gCGGGCUCGGGGacaGCGGuGGcccGCGGc -3'
miRNA:   3'- aaGCUUGAGCCCC---UGCC-CCuauUGCC- -5'
14308 5' -54.8 NC_003521.1 + 40889 0.69 0.924776
Target:  5'- --gGGAC-CGGGG-CGGGGGUcaguuuaauagcgaGGCGGg -3'
miRNA:   3'- aagCUUGaGCCCCuGCCCCUA--------------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 43571 0.69 0.909809
Target:  5'- -cCGcuGACUgGgGGGACGGGGGcaaAACGGa -3'
miRNA:   3'- aaGC--UUGAgC-CCCUGCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 53152 0.67 0.967104
Target:  5'- cUUGAACcacgUCGGGGACGGcggcgaGGAgguCGGc -3'
miRNA:   3'- aAGCUUG----AGCCCCUGCC------CCUauuGCC- -5'
14308 5' -54.8 NC_003521.1 + 69732 0.67 0.96398
Target:  5'- -gCGGuaaCGGcGGGCGGGGAggcGGCGGu -3'
miRNA:   3'- aaGCUugaGCC-CCUGCCCCUa--UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 76675 0.66 0.985525
Target:  5'- -gCGGACUgCGaGGACgcugGGGGAcAGCGGa -3'
miRNA:   3'- aaGCUUGA-GCcCCUG----CCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 90876 0.69 0.915542
Target:  5'- -cCGAG---GGGGACGGGGAggggGACGa -3'
miRNA:   3'- aaGCUUgagCCCCUGCCCCUa---UUGCc -5'
14308 5' -54.8 NC_003521.1 + 92076 0.73 0.772726
Target:  5'- -gCGGAC-CGGGGGuCGGGGGgugcgcagGGCGGu -3'
miRNA:   3'- aaGCUUGaGCCCCU-GCCCCUa-------UUGCC- -5'
14308 5' -54.8 NC_003521.1 + 93485 0.73 0.745028
Target:  5'- -cUGAGCUcCGGGGuCGGGcgcgaGAUGGCGGa -3'
miRNA:   3'- aaGCUUGA-GCCCCuGCCC-----CUAUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 94577 0.68 0.940855
Target:  5'- -gUGAACUgCGGGucaaagaccACGGGGGUGACGa -3'
miRNA:   3'- aaGCUUGA-GCCCc--------UGCCCCUAUUGCc -5'
14308 5' -54.8 NC_003521.1 + 98179 0.72 0.789735
Target:  5'- -aCGAACauccgaaUCGGGG-UGGGGAgGACGGc -3'
miRNA:   3'- aaGCUUG-------AGCCCCuGCCCCUaUUGCC- -5'
14308 5' -54.8 NC_003521.1 + 98219 0.68 0.949422
Target:  5'- -gCGGGCagcggcgUGGGaGGCGGGGA-GGCGGg -3'
miRNA:   3'- aaGCUUGa------GCCC-CUGCCCCUaUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.